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fanglab
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nanodisco
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
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Many meme files in the de novo motif step
#84
linfanxiao
opened
3 weeks ago
0
R10.4.1 support ?
#83
DelphIONe
opened
5 months ago
3
nanodisco difference issue
#82
oohas2000
opened
8 months ago
0
Error when running preprocess
#81
H1889
opened
9 months ago
2
caught segfault in nanodisco preprocess on provided data(TP)
#80
Stride99
opened
9 months ago
0
5mC in GATC motif
#79
DelphIONe
opened
9 months ago
0
How to train the model?
#78
Stride99
opened
10 months ago
0
read does not exist in HDF5 file
#77
hamid89
closed
10 months ago
7
Using a MTAse Ko mutant instead of WGA
#76
kafker
opened
11 months ago
4
chunk_info -> Error in scan
#75
duceppemo
closed
11 months ago
2
nanodisco difference: Problem with `mutate()` column `N_wga`.
#74
BioRB
opened
12 months ago
1
unexpected error during read extraction process using nanodisco preprocess
#73
tweedle828
opened
1 year ago
1
"wrong sign in 'by' argument" while runnning nanodisco motif
#72
monxac
opened
1 year ago
2
nanodisco_command_not_found
#71
SimonChen1997
opened
1 year ago
4
How to mount my local dir
#70
rl4940
opened
1 year ago
4
Generating current differences without WGA sample
#69
DelphIONe
closed
1 year ago
4
Nanodisco difference: no signal difference for majority of a genome
#68
christinehe
opened
1 year ago
5
Error: reads weren't basecalled
#67
Arkadiy-Garber
opened
1 year ago
5
Session directory does not exist
#66
Arkadiy-Garber
closed
1 year ago
1
Failure to install
#65
Arkadiy-Garber
closed
1 year ago
1
No data in chunks despite gzip conversion
#64
Haidermanzer
opened
1 year ago
16
Installation error on Terminal
#63
sophiaswartz020
opened
1 year ago
2
Issue with nanodisco difference in detailed tutorial
#62
starkeynight
closed
1 year ago
3
Binning error - Perplexity is too large
#61
liorzalayet
opened
1 year ago
1
Nanodisco difference: no data for any chunks?
#60
ecpierce
opened
1 year ago
18
fast5_pass only or also fast5_fail?
#59
ecpierce
opened
1 year ago
1
Error with Nanopolish
#58
oliveira-lab
closed
1 year ago
2
use in plant?
#57
yusmiatiliau
opened
1 year ago
2
Providing a basecalled reads in FASTQ file
#56
hasindu2008
opened
1 year ago
9
prepare.parameters.ROC
#55
hahaha12379
opened
1 year ago
2
Only one motif detected
#54
tongzhouxu
closed
1 year ago
4
nanodisco characterize error task 1 failed and RDS file issue
#53
BioRB
opened
1 year ago
1
run error
#52
carlferr
opened
1 year ago
1
Installation via (bio)conda
#51
bgruening
opened
1 year ago
2
Error: tsne perplexity is too large
#50
Sasparle
opened
1 year ago
1
nanodisco preprocess ERROR
#49
carlferr
opened
1 year ago
15
installing issue
#48
carlferr
opened
1 year ago
2
Installation / R errors?
#47
phdegnan
opened
2 years ago
4
Preprocessing not possible with extracted fast5 files
#46
SiegCoppens
closed
2 years ago
4
characterize
#45
mei-du
closed
1 year ago
2
Query and confusions; Please help
#44
shailabhr
closed
1 year ago
8
R package does not have a namespace
#43
mei-du
closed
2 years ago
1
Open and parse .RDS file
#42
yxhuang623
closed
1 year ago
1
Error in preprocess
#41
ilhdkk
closed
2 years ago
3
Columns in nanodisco score output
#40
molleraj
closed
1 year ago
4
WGA
#39
linuxxue
closed
1 year ago
1
multiplexed libraries with multiple taxa
#38
nick-youngblut
closed
1 year ago
4
nanodisco characterize
#37
linuxxue
closed
1 year ago
2
Error in { : task 1 failed - "object 'contig' not found"
#36
aerijman
closed
1 year ago
2
nanodisco score
#35
asershova
closed
1 year ago
1
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