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https://mp.weixin.qq.com/s/F81LzNgrk4hFpEXDm_1E-A
ixxmu updated
1 month ago
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### Need
We would like to start annotating variants in Balsamic using the Loqusdb somatic and germline exported observations.
### Suggested approach
A method for annotating variants has been…
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This is a proposed new public study. Raw genomics data was generated for this study in 2020 and is stored on Synapse: [JHU Biobank project](https://www.synapse.org/#!Synapse:syn4939902/wiki/235907). I…
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## Need
To keep track of local variants we should add the variants we find to LoqusDB. This needs to be done for both normal and tumor samples.
## Suggested approach
*A few sentences about the in…
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**Describe the bug**
It's not possible to store any cases in Housekeeper. This issue affects all workflows.
**To Reproduce**
- `/home/proj/stage/bin/miniconda3/envs/S_hermes/bin/hermes convert …
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### Description
This is about an analysis of a Horizon Discovery reference sample, HD803.
The sample was downsampled and analysed for the first time during 2022 and analysed with BALSAMIC version …
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## Description
Me and @keyvanelhami discussed what to include in the delivery report for BALSAMIC.
This is our proposed changes from the delivery report for mip. (The text in the fields below als…
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**Describe the bug**
I believe @beboche mentioned this before, but perhaps that was over email and not as an issue because I can't find it.
I've been breaking my head for hours on why I get random…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ibkstore/kmcut
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Confirm the following by editing…
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## Need
Issues have appeared in production where bcftools_quality_filter_svdb fails due to a float-value of CN from cnvpytor. This has been resolved in production manually by either rounding up or …