-
**Submitting author:** @rcannood (Robrecht Cannoodt)
**Repository:** https://github.com/viash-io/viash
**Branch with paper.md** (empty if default branch): paper
**Version:** 0.8.1
**Editor:** @daniels…
-
When running the full pipeline with public data, this error popped up ([link](https://production.nftower.jnj.com/orgs/JnJ-Core/workspaces/CS000253-Lysosomal-Storage-Biology/watch/522aAGLLwsryF8)):
…
-
Executing the following script allows one to create a reproducible example:
```bash
mkdir -p src/myscript
cat > src/myscript/config.vsh.yaml src/myworkflow/config.vsh.yaml _viash.yaml
vi…
-
Add clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support
For [JOSS Review] (https://github.com/openjournals/jos…
-
Haven't had the time to take a look at the cause.
In `openproblems-bio/openproblems-v2`, I'm getting this error:
$ viash ns list -q 'batch_integration/workflows/run_benchmark'
Unexpecte…
-
This should be a short and simple error message, instead it's 50 lines including a link to github issues and a deep stack trace.
```
✗ viash test src/label_projection/methods/scanvi_xgboost/config…
-
When using `__merge__` to merge a yaml into a viash config but the YAML to be merged is invalid, we get a nasty stacktrace. Here is an example:
Content of `config.vsh.yaml`:
```yaml
functionali…
-
```
Traceback (most recent call last):
File "/scratch/T96QlO9IXIXMu/b4/f00c4adff1734a511042a2259935d9/.viash_script.sh", line 52, in
data = { key: anndata.read_h5ad(path) for key, path in zi…
-
Reproducible example can be found here: 73c856f
-
If the script fails, there's a log of junk after the actual traceback that will be quite confusing for users. Here is the full output when I run tests on my failing component. IMO, tests should be sil…