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In other words, we should validate `docker` as an optional string so that we can do things like this:
```
task foo {
String? dockerName
command { ... }
runtime {
docker: dockerName
…
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## **Describe the bug**
I have followed the instructions for installation of the pipeline using conda, the installation was successfully completed but when I run it I get the following error:
Sta…
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**Is your feature request related to a problem? Please describe.**
When making WES requests with the Dockstore CLI, the expected response structure is defined here: https://ga4gh.github.io/workflow-ex…
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Hi,
Is there any particular reason to use singularity runtime attributes as opposed to `submit-docker` as in Cromwell docs (https://cromwell.readthedocs.io/en/stable/tutorials/Containers/)? I am as…
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As per user communication- submitting jobs to CoA can sometimes take up to 6 hours before initiating (whereas the processing time is
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Continuous integration tests that run all WDLs on real data.
This is a longer-term goal for me, as I'm sure it will take some effort to get it to work. But there are examples of repositories that …
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## Bug/Usability Report
### Affected tool(s) or class(es)
Mutect2 WDL
### Affected version(s)
- [x] Latest public release version [4.1.81]
- [x] Latest master branch as of October 28, 2021
…
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Thanks for your contribution, I want to refer to your process to implement it step by step, but I can't find the detailed use method, software and workflow,such as smtools、bismark、or piard???
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CRAMs aligned during the NAGIM project ([corresponding Terra workspace](https://app.terra.bio/#workspaces/terra-kccg-production/nagim-demo-workspace/workflows/terra-kccg-production/WholeGenomeReproces…
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As discussed in https://github.com/broadinstitute/cromwell/issues/6235, developers of workflows for GCP who store their images in Google Container Repositories can be exposed to large Google GCS egres…