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Hi ,Thanks for great verson !
But ,I have a tough question there .
I used the turbo version in the RNAseq data(GSE114007).
I found a paper used the version 4.1.2 rMATS and he got a total of…
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Hello, I want to reproduce the four models in the [kipoi manuscript](https://github.com/kipoi/manuscript),but according to the download link, I did not find the `dbscSNV.zip `data file.
![image](ht…
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Going forward, I will add problems to this Googlesheet:
https://docs.google.com/spreadsheets/d/1AME11i0L9TtGqMINUECFKgchKfZWNdk7RvaGM6VyeBY/edit#gid=0
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Dear Dr. Christina Huan Shi,
Thank you for this great software. This software is very helpful and incredibly fast. But when I run it using my own data, I got a result unexpectedly.
I ran psir…
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Hello,I stalled rmats 4.2.0 successfully and use it with my data;
However,when I cat summary.txt, there is zero significant results without errors.
EventType EventTypeDescription TotalEventsJC Tot…
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Hi! Thank you for developing this useful tools!
I met an error. I have two sample about a gene knocked out in two mice, and no replicates. And I do following command for AS to comparing:
```
rmats.…
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Hi Psichomics,
How would I go about getting the dPSI values generated by rMATs into psichomics?
Best,
Austin
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Dear author,
As the title, is there any function in CIRI-long to catch isoforms' counts ?
Or how could I get isoforms' counts instead of circRNA-genes' counts ?
Thanks a lot.
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Dear Team,
I run Whippet on my paired-end, unstranded, polyA+ RNA-seq dataset. The dataset is of 75bp length (all reads in all samples have this length) and performed in triplicates per condition (…