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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SalasLab/HiBED
Confirm the following by editing e…
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Is it possible to generate a list of genes that drive the significance of the enriched cell type?
Thanks!
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1. Given a marker from one cell type, Astrocytes
2. Calculate the mean for each cluster (C1, C2, C3, C4, C5), then rank them as S1, S2, S3, S4, S5
3. Compare S1 with S2 (z test)
if significant,…
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Dear team,
I appreciate very much the effort you have put into the development of this package. I'm working with a hyperframe of replicated point patterns. Following the guidance in the book, I hav…
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**Describe the bug**
There are two list validation issues we are encountering with the latest version of develop. With a 'list like' validation for modelSystemName and cellType, we get the following …
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Created a conda env to try and avoid versioning issues:
``` cat goshifter.yml```
```yml
name: goshifter
channels:
- defaults
- anaconda
- conda-forge
- bioconda
dependencies:
- p…
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https://mp.weixin.qq.com/s/n1XigM90n1EtJBZrlOOo-A
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Do you by any chance know if a bigwig file can be used directly without any pre-aggregation using `vector()`? It looked so according to the [HiGlass docs](https://docs.higlass.io/data_preparation.html…
manzt updated
2 years ago
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This issue is a continuation somehow #72
I am showing an example in which we have snps with a prob_col value higher than the threshold but echolocatoR fails in assigning CS and PP to SNPs
acarras…
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To improve the analysis, we need to integrate the following parameters:
* Number of samples per micron.
* Number of segments per micron.