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Hi brendaf
I have a dataset of ~140,000 ASVs that I want to tun through optimotu. The ASVs have been assigned taxonomy. Do you have any examples or recommendations for preparing the ASVs before run…
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The following chapters are incomplete or missing:
- [ ] Available platforms
- [ ] Synchronising code and outputs
- [ ] Making one thing run faster
- [ ] Running many things at the same time
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Hello,
First of all: thank you very much for sharing this code with very clear description here!
After running the PAQR pipeline successfully, I am getting a list of differential usage of polyA…
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which makes the appearance in Galaxy's tool menu really ugly:
```
```
The information is already in the `manual` which should be sufficient, or?
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### Contact Details
_No response_
### Description of changes
[workbook-3.xlsx](https://github.com/ranchobiosciences/Data_Modeling_Issues_Templates/files/10725594/workbook-3.xlsx)
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## Input specifications
To skip the qc and assembly step we can provide the assemblies and reads used to generate the assemblies in a CSV file together with a CSV file specifying the reads.
The asse…
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To improve ability for users to consume the methods reference switch to ` ` superscript notation. From what I have read Markdown doesn't have an official way to specify superscript. The common practic…
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Hello, I am trying to align metagenomic sequences, when I run initPipeline with the following command I get the expected output:
`initPipeline -q -1 Unmapped.out.mate1 -d projectDir -i 300:800`
Pr…
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Hi there,
I've made a small prototype Nextflow pipeline to run Augustus in PPX mode with custom protein profiles, via Docker or Singularity:
https://github.com/photocyte/luciferase-PPX-predictor-n…
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So for some reason, 2 out of many many many fastq are coming up with this error.
I am not very bioinformatics savy. So may need some help solving this error.
This error means I cannot sort my file…