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It would be good to create a scheduler class to make it easier to support more batch queue systems than just PBS.
There was some discussion around this in a PR https://github.com/payu-org/payu/pull…
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Currently all of the sediment logsheets except one have this equation in the final column of the samplng tab - the source_mat_id
=CONCATENATE(observatory!$A$2,"_",H2,"_",L2,"_",N2)
For EM21 (https…
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Hello all,
Just wanted to let people know what tools I'm working on (or might work on in the future), in case anyone else is interested in these.
I'm concentrating on RNA-seq/ChIP-seq/ATAC-seq wo…
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It would be quite useful if the program was able to handle the `--vntr-bed` being supplied as a `.gz` file compressed with `bgzip` as this allows the same file to be used as elsewhere which require an…
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- I'll put my thoughts of what I want to talk in the seminar in this issue
---
### Structure side:
- Summarized from https://github.com/xp1632/DFKI_working_log/issues/28
**Architecture of …
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Just installed metamos on a new system - and the test suite is failing with an error in matplotlib .
note: I recently removed the latest version of matplotlib and downgraded to v1.3.1, as recommend …
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Documenting APIs often depend on multiple external factors - functional and non-functional aspects, change notes, governance, strategy, many more - and a single externalDocs reference is often insuffi…
ghost updated
5 months ago
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Note: Not able to find the repository for Assembly and Annotation pipeline. So, I am creating this issue here.
Even though we mention the location for the temp directory (--tmp-dir) for spades in "…
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Please don't open issues in an automated fashion. Doing so is spam, and winds up with you being reported to github for it.
ar0ch updated
3 years ago
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### Description of the bug
I am attempting to run the ampliseq pipeline on a single sample to test it on my system. I get an error that says:
```
ERROR ~ No such variable: outfile
```
Is there an is…