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Dear @egonw,
As discussed via twitter we dont find almost any relationship in exported files we do via PathMe.
Our parser runs the following SPARQL query (see below) to get the relationships acros…
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**Describe the bug**
When the user connect a public wifi Hot-Spot with a Captive portal login page what password protected then programs can not connect to the internet. This program use UDP protoc…
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@Chris-Evelo @egonw ;
Since several hormones/polypeptides are in the border region of being called a metabolite or a protein, we could think about including protein IDs for these types of compounds…
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### Description of the issue:
Many reactions do not have any ec-code, or are annotated with multiple ec-codes. Instead, each reaction should be annotated with one ec-code, and if not full ec-code can…
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Example:
HMDB01877
results in (look at chebi)
CHEBI:39867 ChEBI
3121 PubChem-compound
115217 ChEBI
HMDB0001877 HMDB
NIJJYAXOARWZEE-UHFFFAOYSA-N InChIKey
39867 ChEBI
CHEBI:115217 ChEBI
…
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See also #4 for the long discussion on this topic.
I would prefer to use CHEBI:1234 ; simply because then people see where the identifier comes from with more ease. HMDB also includes their databas…
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- Based on the expected databases in a mapping file (which are different for GeneProtein/Metabolite/Etc.), there should be an output which databases should be present in the mapping files. @egonw @tab…
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This issue is to just dump some vaguely related work in;
- [ ] http://grasstunes.net/ontology/similarity/0.2/musim.html
- [ ] http://alignapi.gforge.inria.fr/format.html
- [ ] http://alignapi.gf…
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We had a volunteer point out to us the fact that most of your built-in bridges in do not publish their descriptors, and therefore you won't be able to check the overall (and country-specific) usage me…
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Hi @nunogit ;
I'm testing goliath with the list of HMDb IDs that Freddie was working on:
HMDB00112
HMDB00295
HMDB00901
HMDB00935
HMDB01275
HMDB01877
HMDB13037
When I do autoselect, I get …