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There are analysisfeature records linking chromosomes and scaffolds to gene builds. Since gene builds don't define chromosomes, these should be removed from Chado.
[LEGUME-728] created by ecannon
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I'm [creating a Tripal module](https://github.com/NAL-i5K/tripal_eutils) that imports NCBI XML and creates chado records, as well as linked records.
I think it would be neat to have a recommended, …
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Hi,
would you be receptive to PR's providing interfaces to other Chado modules IE biomaterials, expression data?
I realized that this tool is perfect for automated loading of my [seed dataset](h…
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Tung tree (Vernicia fordii, Hemsl.) genome and transcriptome sequencing reveals coordinate upregulation of fatty acid beta-oxidation and triacylglycerol biosynthesis pathways during eleostearic acid…
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Some things to be done for tripal:
- [ ] [python-tripal](https://github.com/abretaud/python-tripal): Python scripts to load specific data using REST API/python-tripal
- [x] fasta (a generic script w…
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This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc:
http://gmod.827538.n3.nabble.com/An-alt…
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Putting this at low priority, but it might be worth doing at some point. It seems we will still need to use artemis for a while for some annotations (GO ISO) and community curations which can contain …
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The following will likely be a list of bugs/features that should be integrated into the GFF Importer for Tripal version 4.
These suggested features are based on the test cases / test files used to te…
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A new dump of an initial chado database version 1.31 has been created (in the update_chado_dump_1.31 branch). However TBro is not able to install into this schema
```
phing database-initialize -debug…
iimog updated
8 years ago
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I've created a test template excel file of genotype_snp type which is comprised of db, dataset, stock and genotype_snp sheets. When I uploaded the excel with MCL, it failed with error logs like this:
…