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**Describe the bug**
While running RepeatModeler, I am consistently getting error at the point where the de novo LTR sequences found by LtrRetriever are being aligned with MAFFT. The RepeatScout / Re…
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Hi, I used bambu on one sample. The alignment result(.bam) of this sample is about 34G. And I run bambu on HPC cluster. I set the cpu number to 20. Then run it. But it took 6 hours to finish the job. …
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Hi, run command :
singularity exec -B $PWD:$PWD braker3.sif braker.pl --useexisting --species Brachymystax_lenok1 --genome ./s3_repeats_screen/A1.genome.masked.final.fasta --prot_seq ./s1_input_da…
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### Description of the bug
Hi there,
Could you comment on my error on strandness below.
My sample sheet is something like this:
```
sample,fastq_1,fastq_2,strandedness
MaleKO_S1,/projects/S1.R1.fast…
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We need to review what https://nf-co.re/sarek can do to determine:
- if it could be used as is
- if it could be used with modifications
- if we'd rather extract and replicate some functionality h…
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1. The first time, I installed EarlGrey **v4.4.0** and RepeatMasker **v4.16**, and I ran around 50 species using this version. The running time of every species was less than 3 days, and those res…
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您好，我在使用calmeth的过程中出现了free(): double free detected in tcache 2
Aborted (core dumped)的错误，向您请教。
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**Hello!
I am receiving the following error:**
EOFError: EOF when reading a line
/var/spool/slurm/slurmd/job9943744/slurm_script: line 27: --probefile: command not found
**with the followi…
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Hello
I am teaching myself how to run panX using TestSet. Here is the command I run exactly following the instructions.
./panX.py -fn data/TestSet/ -sl TestSet -t 32 > TestSet.log 2> TestSet.err
…