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Perhaps wishfull thinking, but when I searched on A. baumannii 34654, the public genome that I mapped private RNA seq data to, and then imported the differential expression results using the DIff Exp …
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During the Edinburgh STSM we discovered that mitochondrial and ribosomal genes show up more often than expected in the differential expression results.
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**User story**
For clusters / cell types / cell sets which have been defined upstream, differential expression / accessibility can be computed for each cell set by comparing to all (or all other) c…
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## Implementing Automatic Differentiator
This issue tracks the implementation of an automatic differentiator for the expression compiler. The compiler parses expressions into binary trees, and this…
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I am using diffxpy to calculate differential gene expression analysis, but every time the iteration for the calculation starts and is ended quickly with the same error. What could be the reason?
Th…
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Hello,
I've been using the differential transcript expression analysis well, until recently I've been trying with a different dataset and I keep getting an error "names" attribute[2] must be the s…
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Might be worth thinking about allowing more complicated derivative expressions on the left side of differential equations.
```julia
@reaction_network begin
@variables A(t) B(t)
@equations …
vyudu updated
2 months ago
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Hello!
First words: impressive work! I really like Cerebro :slightly_smiling_face:
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Also, I like some features of [Loupe Cell Browser](https://support.10xgenomics.com/single-cell-gene-expr…
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Since the model simulates the behavior of the cell and the perturbation of the cell itself, there needs to be some kind of validation (maybe in another branch) to describe and compare the simulation i…