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After last two commits in recent days, I'm not able to successfully run `prepare_annotation_files` method (each of the updates introduced another error):
common initialization:
```
# to have all …
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I'm running into an issue at the inventory plugin. At the very first step, Inventory plugin step 4. When I run it I get this :
(devnetvenv) % ansible-inventory -i inventory/dna_center.yml --graph
…
rosia updated
4 years ago
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```
As discussed on the forum:
https://groups.google.com/forum/#!topic/ruffus_discuss/ErfMSsKNFB4, this
parameter would specify a folder to put all intermediate/final files. Currently
it can be don…
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https://hackmd.io/9ORFRJGaTOiOdEAY-Aih2A?view
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# open lab / Sat + Monday , Jul 20 & 22, 2024 / STAMPS 2024
Suggestion for open lab:
* run the commands below on the "canned" data;
* diagr…
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Hi, I perform MetageneAnalysis and use hg38.longest.transcripts.info.txt from Ribominer package. I got an error **ValueError: invalid literal for int() with base 10: 'CDS_length'**:
![172396041511…
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Hi,
I'm currently trying to use 3d-dna (version 180922) to assemble a bird genome. The run-asm-pipeline.sh pipeline ran and generate almost all the .hic files except split stage. And, I got the follo…
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-searching for reference exome (CDS) as a reference for our exome sequence data due to several reasons:
1- when we aligned to one chromosome like chr 20, the alignment rate was v.v low 2.8%
2- whe…
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Some files are missing (DNA), so can't compile it. Please fix it.
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This is a repeated issue: /hot/project/process/MissingPeptides/MISP-000132-MissingPeptidesPanCanP1/CPTAC_PAAD/WXS/work/d6/18e638e93144f211ed12a14280164c/slurm.out
convert-BAM2FASTQ failed.
```
…
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**Describe the issue**
Pipeline completes create_input_csv_metapipeli... and create_config_json steps but fails at call_metapipeline_DNA after 30 minutes. Log file does not show error message - just …