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Hi,
Thanks for the nice tool!
I've been looking into using FLAMES for my gene/transcript quantification. I already have a customized pipeline for the demultiplexing/umi identification so I was l…
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I recently created an issue:
https://github.com/ablab/spades/issues/413
That I closed because I thought the problem was tabs in the seqname. I didn't see the full error before and it turns out the…
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Hi @js2264,
When running the HiCool function like that :
x force -> -> py_call_impl
Execution halte
I feel like it is a fastq files problem, because on certain fastq files it works and on o…
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Hello. I am currently trying to realign the raw data from this paper using the kallisto-bustools pipeline. I am able to specify custom technology by demarcating which read and the start and end positi…
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```
$ metawrap assembly -1 CLEAN_READS/ALL_READS_1.fastq -2 CLEAN_READS/ALL_READS_2.fastq -o ASSEMBLYOUT
metawrap assembly -1 CLEAN_READS/ALL_READS_1.fastq -2 CLEAN_READS/ALL_READS_2.fastq -o AS…
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does this library support the fastq format:
https://en.wikipedia.org/wiki/FASTQ_format
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Hello, I hope you are well!
I'm able to download a specific NCBI Assembly via `bactopia --accession [accession]` -- is there a way to do so with a list of NCBI Assembly accessions (i.e bactopia --…
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Dear author,
I want to ask what is the default fastq file, only foward reads or reverse reads or interleaved reads?
Thanks,
Jianshu
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Requesting support for gzipped fastq files.
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Hi, I am working on the m6a identification on my ONT data. I installed NanoSPA according to the instructions. I can run the test data successfully and get the output files in the plus_strand folder. H…