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### Background
In recent years, there has been a growing interest in developing generative pretrained models for single-cell biology, such as [scGPT](https://www.nature.com/articles/s41592-024-02201-…
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Hi,
I would like to apply SCORPION on my mouse scRNA-seq data, but I think scorpionTest only includes example prior networks for homo sapiens. May I please have detailed source files or methods to …
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Hi. Thank you for developing this amazing tool and gathering all the experiment results into an easy accessible form.
I was trying some vignettes,
and found out "ligand_tf_matrix_nsga2r_final_mou…
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In the decoupler implementation of gsea, how does decoupler handle genes present in the geneset, but missing in the ranked gene list? In particular, I'm working with a single cell dataset that contain…
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**Describe your question**
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https://mp.weixin.qq.com/s/Z1gz902QTjNIYYIYkwKzHQ
ixxmu updated
2 weeks ago
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When I tried to run the example data, the command ’macs2 callpeak -t ${indir}/${cluster}.bam -f BAM -g mm -n $outdir/${cluster}_peak -B‘ in the ’genPriorNetwork_scMTNI.sh‘ file reported an error. I fo…
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We have
https://www.pombase.org/term/MOD:00818
I wanted to check this using
https://services.healthtech.dtu.dk/services/NetGPI-1.1/
but I haven't been able to run the search to completion.
Pr…
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### ERR output:
```
2024-07-17 17:46:40,496 - pyscenic.cli.pyscenic - INFO - Loading expression matrix.
2024-07-17 17:48:21,231 - pyscenic.cli.pyscenic - INFO - Inferring regulatory networks.
20…