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Noticed that OBI does not to use the `hasDBXref` annotation [http://www.geneontology.org/formats/oboInOwl#hasDbXref] - what annotation should be used for database cross-references?
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This is an attempt to simplify the AmiGO load (using a unified ontology) and have more QC done upfront without complications in the canary build `go-ontology-dev`.
@pgaudet @balhoff I've dropped th…
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- implement GO rules / restrictions: http://geneontology.org/docs/go-annotations/ - https://github.com/geneontology/go-site/tree/master/metadata/rules
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##### Project link
https://github.com/orgs/geneontology/projects/173
##### Project description
This project will track the curation of Reactome Pathways into GO-CAM for species other than human…
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Package Hets with OWL API version 4.
Version 3.5 leads to the following problem. The following, when put into an `omn` file
```
Prefix: :
Ontology: O
Class: C
```
leads to the following theo…
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We recently discovered, while working on Cloudflare for GO public access points (https://github.com/geneontology/operations/issues/70) that we got errors in ontobio.
```
[2024-08-20T06:50:13.986Z]…
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As part of the doc drafted at https://docs.google.com/document/d/1j1zO-JHMaXi4ESrjTm_X1amLKdm3vO4szUaeB5LvxvA/edit#heading=h.25jngq5vebjo and the draft at https://github.com/geneontology/geneontology.…
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This is unintuitive to many users:
- http://amigo.geneontology.org/amigo/term/GO:0044767#display-lineage-tab
- http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0044767
We can see a long list of direct subcla…
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We need documentation at the site level regarding the data licensing.
See http://geneontology.org/page/use-and-license
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Sometimes the response payload is:
```
{
"message": "Problems parsing JSON",
"documentation_url": "https://developer.github.com/v3"
}
```
this is currently not detected.
We expect something lik…