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biolink
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ontobio
python library for working with ontologies and ontology associations
https://ontobio.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Go site 2210 gorule 0000027 must check dbs are in the db xref file
#677
mugitty
opened
1 week ago
7
Go site 2246 gorule 0000001 rnac rna types are getting mangled
#676
mugitty
closed
3 weeks ago
7
Minimal changes for gpad gpi 2 0
#675
sierra-moxon
closed
1 month ago
0
Go site 676 gorule 0000022 check for retracted publications
#674
mugitty
closed
1 month ago
4
For #2273 Fix path
#673
mugitty
closed
3 months ago
3
For #2273
#672
mugitty
closed
3 months ago
0
ontobio pull request failing workflow actions due to Monarch
#671
mugitty
opened
3 months ago
1
For #2108
#670
mugitty
closed
3 months ago
1
For #887
#669
mugitty
closed
4 months ago
1
For #2108
#668
mugitty
closed
4 months ago
0
For #1553
#667
mugitty
closed
4 months ago
2
For #2064 - Added check for pipe in gene symbol
#666
mugitty
closed
4 months ago
3
Add underscore to GO_REF:0000033
#665
dustine32
closed
5 months ago
0
remove -aux from golr url
#664
sierra-moxon
closed
5 months ago
0
fix header emitted from gpad writer to match 2.0 specifications
#663
sierra-moxon
closed
1 month ago
3
For #346
#662
mugitty
closed
7 months ago
0
For #1658
#661
mugitty
closed
7 months ago
0
null check with_from items
#660
sierra-moxon
closed
7 months ago
3
For #2131
#659
mugitty
closed
7 months ago
0
For #2124 Disable Gorule51
#658
mugitty
closed
7 months ago
1
For #2175 validate go id
#657
mugitty
closed
7 months ago
1
For #1523 check for unique GO ID
#656
mugitty
closed
7 months ago
1
For #2072
#655
mugitty
closed
7 months ago
0
For #2081 repair goid, with/from and extension before running gorule …
#654
mugitty
closed
8 months ago
4
For #2093
#653
mugitty
closed
8 months ago
8
sqlite3.DatabaseError: file is not a database
#652
AITCM
opened
8 months ago
0
For #2079 added check for binding
#651
mugitty
closed
8 months ago
1
For #1658
#650
mugitty
closed
7 months ago
8
Reverting FAIL to OKAY since obsolete terms have no namespace
#649
dustine32
closed
9 months ago
0
Handle GPI label merge for geneontology/go-releases#50
#648
dustine32
closed
9 months ago
3
For #2070 check for numeric taxon
#647
mugitty
closed
9 months ago
1
For #2002 updated due to change in requirements
#646
mugitty
closed
9 months ago
1
Go site 2066 gorule 0000001 invalid taxon id 0
#645
mugitty
closed
9 months ago
0
For #2058 gorule-0000051 first implementation
#644
mugitty
closed
9 months ago
0
For #2049 Added check for DB object symbol
#643
mugitty
closed
10 months ago
0
For #2038 Changed to error from warning
#642
mugitty
closed
10 months ago
0
Update pypi release instructions
#641
sierra-moxon
closed
9 months ago
1
For #844
#640
mugitty
closed
10 months ago
0
add optional makefile target for generating pyproject.toml and a poetry environment from the existing requirements.txt file
#639
sierra-moxon
closed
10 months ago
6
For geneontology/go-site#2030
#638
mugitty
closed
10 months ago
0
Skip check if ontology is None
#637
mugitty
closed
1 year ago
0
For geneontology/go-site#1519 - exclude annotations with source = GOC
#636
mugitty
closed
1 year ago
0
For geneontology/go-site#895 fix list bug
#635
mugitty
closed
1 year ago
0
Check if annotated term is in the complex closure
#634
mugitty
closed
1 year ago
0
For #844
#633
mugitty
closed
1 year ago
0
For geneontology/go-site#844
#632
mugitty
closed
1 year ago
0
Restrict dataclasses pkg installation to < python 3.7
#631
sransara
closed
7 months ago
1
Import breaks on >=Python3.7 because of dataclasses package
#630
sransara
closed
7 months ago
1
Change IEA expiration date for geneontology/pipeline#317
#629
dustine32
closed
1 year ago
1
enrichment_test() function not returning anything
#628
kcortes133
opened
1 year ago
0
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