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biolink
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ontobio
python library for working with ontologies and ontology associations
https://ontobio.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
118
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remove object from map to prevent accidental removal from fq parameter
#627
sierra-moxon
closed
1 year ago
0
Add additional SO terms to the hard-coded map
#626
kltm
closed
1 year ago
1
Use gaf-eco-mapping-derived.txt in EcoMap
#625
dustine32
closed
2 years ago
0
EcoMap should parse eco.owl as ontology
#624
dustine32
opened
2 years ago
1
Use gaf-eco-mapping-derived.txt in EcoMap in GpadParser and GafWriter
#623
dustine32
closed
2 years ago
2
Lock down evaluating allow_unmapped_eco defaults
#622
dustine32
closed
2 years ago
1
Require GPAD lines to use GAF-compatible ECO codes
#621
dustine32
closed
2 years ago
1
Converting GPAD to GAF can result in blank evidence codes if no ECO-to-GAF mapping exists
#620
dustine32
closed
2 years ago
2
Ignore GORULE:0000028 aspect check when parsing GPAD
#619
dustine32
closed
2 years ago
2
Adds _taxon_map subkey to GolrSearchQuery result
#618
falquaddoomi
closed
2 years ago
1
Convert relations to has_primary_input for #613
#617
dustine32
closed
2 years ago
4
Updates Token field 'category' to 'categories'
#616
falquaddoomi
opened
2 years ago
1
"category" field in Token should be "categories"
#615
falquaddoomi
opened
2 years ago
0
Update qc.py
#614
kltm
closed
2 years ago
2
GO-CAM translation should convert 'transports or maintains localization of' and other relations
#613
dustine32
closed
2 years ago
3
Cannot render subgraphs using GraphRenderer
#612
remerjohnson
opened
2 years ago
0
add pypi publish github action?
#611
sierra-moxon
opened
2 years ago
1
spit out increases in the diff tool
#610
sierra-moxon
opened
2 years ago
0
Pass full evidence object to add_evidence.
#609
balhoff
closed
2 years ago
0
ontobio output to obograph?
#608
dosumis
opened
2 years ago
0
loading local json files fails
#607
dosumis
opened
2 years ago
1
ogr bug?
#606
dosumis
opened
2 years ago
1
pyparsing upgrade causes AttributeError
#605
dustine32
closed
2 years ago
1
Emit creation date on Evidence individual
#604
dustine32
closed
2 years ago
1
Return empty list for with/from if no term
#603
dustine32
closed
2 years ago
1
Obsolete GO term with no replacement breaks with/from validation
#602
dustine32
closed
2 years ago
2
error in gocamgen
#601
balhoff
closed
2 years ago
1
Patch to fix publication bug on the ui
#600
kshefchek
closed
2 years ago
0
Emit creation-date on Evidence individuals
#599
dustine32
closed
2 years ago
1
Add Xenbase taxon map to owlsim
#598
kshefchek
closed
2 years ago
0
ModuleNotFoundError: No module named ‘ontobio.graph_io'
#597
realmarcin
opened
2 years ago
0
get_minimal_subgraph gives "RecursionError: maximum recursion depth exceeded"
#596
realmarcin
opened
2 years ago
0
add adapter functions for match maker exchange and owlsim
#595
kshefchek
closed
2 years ago
4
gpad diff tool, calculate summary stats and group by columns, reports on exact and close matches as well as missing lines in one file compared to another.
#594
sierra-moxon
closed
2 years ago
3
automatically fix obsolete GO terms in the with/from field
#593
sierra-moxon
closed
2 years ago
2
Bump GAF relation validate to before CURIE lkp - issue #591
#592
dustine32
closed
2 years ago
0
Unknown GAF qualifier/relation breaks parser
#591
dustine32
closed
2 years ago
1
Fix hard-coded ECO codes
#590
dustine32
closed
2 years ago
0
GAF evidence code to ECO conversion: always use gaf-eco-mapping.txt PURL
#589
dustine32
closed
2 years ago
0
Moving biolink scigraph to ontobio, owlsim improvements
#588
kshefchek
closed
2 years ago
5
Unpin marshmallow
#587
gouttegd
closed
2 years ago
3
What does this repo do? Please improve the readme
#586
cthoyt
opened
2 years ago
0
Fix bug in obograph_utils by replacing the usage of deprecated networkx methods
#585
deepakunni3
closed
2 years ago
1
Update relations.py
#584
vanaukenk
closed
2 years ago
6
Add handling for creation, modification, and import dates; for #582
#583
dustine32
closed
2 years ago
5
Changes to rdfgen/gocamgen for handling new date fields
#582
dustine32
closed
2 years ago
0
Move this repo to the GO organization?
#581
nlharris
closed
1 year ago
0
Adding 'existence overlaps' RO relation
#580
vanaukenk
closed
2 years ago
1
Add missing chardet dependency for PyShEx. For #578
#579
dustine32
closed
2 years ago
0
Add missing chardet dependency for PyShEx module
#578
dustine32
closed
2 years ago
4
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