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biolink
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ontobio
python library for working with ontologies and ontology associations
https://ontobio.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Repair obsolete terms before other GO rule tests; for #576
#577
dustine32
closed
3 years ago
2
Run GO rule 20 (obsolete term repair) before GO rule 28 (term aspect check)
#576
dustine32
opened
3 years ago
2
Gocamgen issue 90 modeltitle fmt
#575
dustine32
closed
3 years ago
1
Find and merge other GPIs for a dataset. For geneontology/pipeline#239
#574
dustine32
closed
3 years ago
0
Updated to new RO term and relaxed error handling for missing ext rel
#573
dustine32
closed
3 years ago
4
Change CURIE of exists_during in lookup
#572
dustine32
closed
3 years ago
1
Param to set modelstate for geneontology/gocamgen#91
#571
dustine32
closed
3 years ago
6
Activate Ref Pref and add test for geneontology/gocamgen#31
#570
dustine32
closed
3 years ago
0
Fix circular reference for #568; add test_gocamgen to travis
#569
dustine32
closed
3 years ago
2
Fix circular import reference between collapsed_assoc and errors
#568
dustine32
closed
3 years ago
0
#566 add with/from back to has_input models when the term is a binding term
#567
sierra-moxon
closed
3 years ago
1
Add ns2:evidence-with property to models that have been converted to 'has_input' edges.
#566
sierra-moxon
closed
3 years ago
0
Fix default --rule-set handling for #564
#565
dustine32
closed
3 years ago
1
Default rule_set in validate.py produce is parsed as list ['a', 'l', 'l']
#564
dustine32
closed
3 years ago
2
GO Rule 15 checks part_of descendants of GO:0044419; geneontology/go-…
#563
dustine32
closed
3 years ago
1
adding some ontobio-parse-assocs docs
#562
dougli1sqrd
closed
3 years ago
1
documentation for GoRules engine
#561
dougli1sqrd
closed
3 years ago
0
increase owlsim limit to accurately rank non phenodigm metrics
#560
kshefchek
closed
3 years ago
0
Fixing ontobio-parse-assocs to run all rules; for #558
#559
dustine32
closed
3 years ago
0
param to run ALL GO rules in ontobio-parse-assocs does not run all rules
#558
dustine32
closed
3 years ago
2
Go site 1682 gpi obj type label
#557
dustine32
closed
3 years ago
0
Go site 1681 gpi header newline
#556
dustine32
closed
3 years ago
0
anchor networkx to 2.3
#555
kshefchek
closed
3 years ago
0
Graph.node removed in networkX 2.4
#554
kshefchek
closed
2 years ago
5
Pulling gene connection from GPI Encoded By field; for geneontology/g…
#553
dustine32
closed
3 years ago
2
Emit providedBy to all individuals; for geneontology/gocamgen#89
#552
dustine32
closed
3 years ago
4
tweak to #550 - add colon to wildcard query
#551
kshefchek
closed
3 years ago
0
solr search query add support for filtering based on equivalent curie prefix, leaf nodes
#550
kshefchek
closed
3 years ago
6
Update relations.py for issue #548
#549
dustine32
closed
3 years ago
0
Add missing relations to relations.py
#548
dustine32
closed
3 years ago
3
updating requirements to only specify greater-than version dependencies
#547
dougli1sqrd
closed
3 years ago
0
Issue 544 rule set bugfix
#546
dougli1sqrd
closed
3 years ago
0
Issue 544 rulesets
#545
dougli1sqrd
closed
3 years ago
3
There should be a way to exclude some GO rules when parsing a GAF file
#544
valearna
opened
3 years ago
6
Emit comments from GPAD annotation properties
#543
dustine32
closed
3 years ago
1
Gocamgen reporting changes and deleting gpad_extensions_mapper
#542
dustine32
closed
3 years ago
1
updates needed for new pipeline kernel, small bugifxes
#541
dougli1sqrd
closed
3 years ago
1
generate reports on differences in two gpad2.0 files
#540
sierra-moxon
opened
3 years ago
5
update gorule 61 again
#539
dougli1sqrd
closed
3 years ago
1
updating gaf writer to correct new header requirements in gaf 2.2
#538
dougli1sqrd
closed
3 years ago
1
updating gorule 61 to repair in bio process
#537
dougli1sqrd
closed
3 years ago
1
fixing gorule repair 61 when annotating to CC root
#536
dougli1sqrd
closed
3 years ago
0
WIP: lazy access to sparql endpoint
#535
cmungall
opened
3 years ago
0
synonym parsing skips synonyms with xsd:string declared
#534
goodb
opened
3 years ago
2
gorule 61 implementation in ontobio
#533
dougli1sqrd
closed
3 years ago
0
Newest gocamgen fixes
#532
dustine32
closed
3 years ago
0
updating gorule 59 upconvert from gaf 2.1
#531
dougli1sqrd
closed
3 years ago
1
expand a TSV using ontology lookups
#530
cmungall
closed
3 years ago
1
Gocamgen changes - model taxon, provided_by, annot prop handling
#529
dustine32
closed
3 years ago
0
go summary notebook improvements
#528
cmungall
closed
3 years ago
0
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