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In the result folder, the start and end positions of genes marked in *.gbf, *.gbf.gene.fasta and summary.txt are inconsistent. Why is this?
Looking forward to your reply! Thank you！
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### Your GTNH Discord Username
RoyalArmor#6330
### Your Pack Version
2.7.0 beta 2
### Your Server
SP
### Java Version
Java 8
### Type of Server
None
### Your Actions
extracting genes with m…
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Dear Vadim,
I have an issue with the Genes.MaxLFQ in DIA-NN v1.9.
In my data set, the Genes IGHG2 correspond to only one Protein.Group. However, the the quantUTM values for PG.MaxLFQ and Genes.Max…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [X] (option…
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Genie has many mutations involving genes which are off panel. How should we regard profiling in this case? I.e. when a single sample has an off-panel mutation, should we assume all samples in the "c…
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1. Make blast db for Hydra
2. Make blast db for Nematostella
3. Bowtie2 index
4. Blastn hydra genome to nematostella genome
5. Blasn Nematostella genes to Hydra genome
6. splign
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Hi,
I am using the egapx-0.3 to annotate an insect genome, i find some genes exon structure seems not right. Do you know how to improve this?
![test](https://github.com/user-attachments/assets/106…
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Thank you very much for your open-source code; this is a very meaningful research. I have a question regarding the Materials and Methods section and hope you can help clarify it.
In the "Connecting M…
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Hello teacher, could you please help me identify where the problem is?
batmeth2 methyGff --coverage 4 -nC 1 --genome genomic.fa -b5 ../genes.bed5 --body --promoter --GENE --distance 2000 --step 0.0…
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Hello,
I am having issues running xCell using the Charoentong signatures. This analysis won't run on the webpage and produes the error below. If I select the xCell signatures and use the same data…