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```
2 compounds have 0 values after the netcdf replacement, why?
Pyruvic acid and lactic acid have several zero replaced values as well as some unknown compounds
```
Original issue reported on code…
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Prepare image for DeepCell: https://portal.hubmapconsortium.org/browse/dataset/f998d229419480586317be5866079c2f
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This is related to #293, but #293's fix doesn't work for this problem.
From the Hellbender project (broadinstitute/hellbender#650):
When we copy a Google read (ie., a com.google.api.services.genomic…
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# Exploratory analysis of big biological data in R (a short course)
## Pre-learning
- Datacamp
## Classes
1. Tidy data. dplyr.
2. More tidy data. tidyr. ggplot2.
3. Genomics example…
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> Next-generation sequencing (NGS) technologies have enabled affordable sequencing of billions of short DNA fragments at high throughput, paving the way for population-scale genomics. Genomics data an…
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Dear snparcher developers,
I encounter errors when I run the pipeline on real size datasets.
I get this kind of message during bam2gvcf, gvcf2DB, DB2vcf or concat_gvcfs.
```
Error in rule DB2…
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Hello,
I try to run the primate genome on the AWS using such command:
```
TOIL_AWS_AMI=ami-aff944d5 nohup cactus --configFile primate_progressive_config.xml --stats --nodeTypes c4.8xlarge:0.6,r4.8x…
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### Description of the bug
When specifying mixed samples (tumor-only and paired) and some tools do not work for tumor-only, like msisensorpro, the pipeline will fail.
Reported by @MolPath-Bioinf…
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As a follow-up issue to #98, incorporate David's feedback for the Dryad data on CyVerse re: metadata and landing page:
> thanks for doing this - the public folder should be used to mimic the conten…
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Hi @simonhmartin ,
I tried to run the script ABBABABAwindows.py to calculate D and fd, while I found this issue
Traceback (most recent call last):
File "/home1/xx/miniconda2/envs/geno/lib/python3…