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Hi~ Thank you for this wonderful work, i would like to know about an issue i came across.
KIR3DL3, KIR3DP1, KIR2DL4, and KIR3DL2 are four frame kir genes which in principle every individual should h…
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# Preferred Name
# Alternative Name
(Please specify any alternative names for the concept, specify the language if not English)
# Definition
(Please provide a definition for the concept, inclu…
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Hi! Nifty package, very useful!
I notice the genotype information is supplied in very particular form.
Is there a way to autogenerate genotype files (like your simupairs.txt) for an arbitrary n…
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In line 235, the threshold to call genotype is hard-coded to 98%. Could you add an input variable that can customize this?
https://github.com/USDA-VS/GenoFLU/blob/f08f571336d37e2667d1dff6896fb47db0…
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/192) by Michael Wykes (Bitbucket: [m_wykes](https://bitbucket.org/m_wykes), ).**
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Would it b…
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Hi,
I used GAPIT few months ago and it worked perfectly, Now i ran GAPIT functions after getting new data and these errors pops out. I tried using the old data as it is, but same happens. Please H…
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Hi, I'm trying to genotype an SV VCF with Delly and getting this error:
```
Error: Delly genotyping requires local SV assembly (INFO/CONSENSUS) and breakpoint (INFO/CONSBP) introduced in delly v1.1.…
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We currently have a folder called `delete_me` in the modules repo.
This contains a wide range of files that have been deposited, mostly for specific modules.
It is NOT included in the README file, …
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```
ds = sg.simulate_genotype_call_dataset(n_variant=2, n_sample=4, missing_pct=0, phased=True, seed=1)
for i, alleles in enumerate(ds['variant_allele'].values):
print(f"Site {i}: {alleles}")
…