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What data formats/options do DaSH attendees see sending as 'raw reads' to NMDP? FASTA? FASTQ? Done as an HML message payload or external link? If URI, where will the data live? For how long?
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Many papers on mass-spectrometry based proteomics have shown the use of deep learning for intensity prediction, combining scores across search algorithms, retention time, collision corss section predi…
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Hi Lijia Yu,
When I was running sveditor.py script with an inversion variant as an input, the job was killed when the step of mapping by bwa starts
File "/home/asmmahmoud/ctg/varben/VarBen-mast…
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Hello,
DeepImmuno might just be what I am looking for!
Unfortunately, I cannot clone the project without error, because some file names contain special characters:
new_imgt_scraping/new_imgt/n…
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Hello, we are using your database with HLA-typing tool xHLA (https://github.com/humanlongevity/HLA).
Base tool is not updated, but it produced fairly good results and have [script](https://github.c…
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Dear developers,
Hello. I have been using MoDec v 1.2 and I would like to know how the "Score" in the output file "Responsibilities/bestPepResp_....txt" is calculated. I couldn't find the calculat…
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Getting this exception using the versioned download in v3.0 (https://github.com/enasequence/cramtools/archive/v3.0.tar.gz):
``` bash
time java \
-jar "cramtools-3.0/cramtools-3.0.jar" \
cram …
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Hi OPERA-MS makers,
I have tried thet tool using the command
```
(base) pengxi@ubuntu_r740:~/softwares/OPERA-MS$ perl OPERA-MS.pl --contig-file /home/wangdanrui/HLa/metaspades/HLa_contigs.fasta -…
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Hi,
Graphmap failed to build index:
```
....
[08:33:21 BuildIndexes] Loading reference sequences.
[08:34:27 SetupIndex_] Building the index for shape: '11110111101111'.
[08:34:48 Create] Allo…