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This results in build failure.
```
/bin/sh: /tmp/kallisto-20180215-71993-1fpw0fo/kallisto-0.44.0/ext/htslib/configure: No such file or directory
make[3]: *** [ext/htslib/src/htslib-stamp/htslib-c…
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Hi,
I got the following error message from kallisto quant, but kallisto seems to be on version 0.50.0 and it doesn't explain what those versions refer to.
```
[quant] fragment length distributio…
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An output format that contains counts for all transcripts (in standard order) would be useful for downstream analysis. Like most other quant software (htseq-count, kallisto, salmon)
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Hello,
When trying to align reads to to the end of a gene, kallisto is unable to pseudoalign this read. However when using the --single-overhang option, pseudoalignment occurs.
My question is …
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Hi,
we are facing the following problem with kallisto 0.44 for paired-end data, but it does not seem to be specific to being paired-end (see below):
- [quant] processed 56,725,603 reads, 20,911,8…
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I have 10X 3' v1 chemistry data with four fastq files:
```
EBT0_1A_S1_L001_I1_001.fastq.gz # 8 nt per read
EBT0_1A_S1_L001_R1_001.fastq.gz # 98 nt per read
EBT0_1A_S1_L001_R2_001.fastq.gz # 16 n…
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Under some circumstances, the POS field of some reads in the pseudo-bam file are shifted by a few bases. The read will not match the sequence in these cases.
About 1-2% of reads show this behavior…
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Hello, I'm having an error that i cant understand when trying to get my count matrix with kb count:
$ kb count -i index.idx -g t2g.txt -t 15 --em --filter --loom -o out_em_algorithm_filter/ -x 10XV…
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when I build feature using -e parameter,it occurs error information
![图片](https://user-images.githubusercontent.com/43978418/56010950-34ec2400-5d18-11e9-9c62-196fb53ce43e.png)
my kallisto result
![…
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I have the following test program.
~~~javascript
#! /usr/bin/node
'use strict';
const syslog = require('modern-syslog');
syslog.open ("myident",
syslog.LOG_PID | syslog.LOG_ODEL…