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Hello everyone,
I am using Eggnog Mapper to functionally annotate some archaea proteomes (genomes that were annotated within RAST + DRAM).
However, when I look at the results some of my proteins…
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Making multiple HTTP requests at once could make a similar effect to DoS attack. So it is helpful to keep service availability that `HttpTransport` support exponential backoff and jitter when making a…
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Question: Is there a, general, expected runtime for the KEGG database connection step of the pathway_annotation() command?
This is my first time using the package, and I am passing (what I think i…
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* eggnog2gbk version: 0.0.7
* Python version: 3.8.2
* Operating System: CentOS Linux 7
### Description
Hi, I'm trying to use your tool with my output from eggnog-mapper v2
### What I Did
I…
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Dear Lamian team,
Thank you very much for creating this tool, it looks really promising and useful for my analysis. However, I am facing an error.
I am studying the gene expression over time from …
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Hello,
I've been running the most recent Dockerized version of Trinotate. I completed steps 2, 3, and 4 as seen in https://github.com/Trinotate/Trinotate/wiki/Software-installation-and-data-require…
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This is for annotation with KOs of a metagenomic project, sampled from many locations. I am looking to use the workflow:
assembled contigs -> Prokka -> proteins WITH reference to original contigs -> …
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## Short description of the problem
KeyError: 'reaction_network_ko_annotations_hash' when running `anvi-reaction-network`
## anvi'o version
```
Anvi'o .......................................: …
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Dear all
I ran the following command:
```bash
ENRICHM_DB=/directory_to/enrichm_database
enrichm annotate --output /current directory/output_annotate_ko --ko_hmm --genome_directory /current_d…
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Despite the firmware being installed to `/usr/lib/firmware/updates/intel/vpu/*`, it seems that dracut is not picking up the new firmware when generating the initramfs. Use `sudo lsinitrd` to confirm t…