geronimp enrichM issues

geronimp / enrichM

Toolbox for comparative genomics of MAGs

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issues

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keyERROR

#137 mengyuan09876 opened 7 months ago
1
Issues with Conda installation

#136 AshSudarshan opened 8 months ago
4
K00362 cannot assign to model M00530

#135 qikongwanli closed 1 year ago
0
feat(BPA-628): added a boolean for checking ENRICMDB

#134 areejalsheikh closed 1 year ago
1
feat(BPA-627): prints None when there are not hits

#133 areejalsheikh closed 1 year ago
0
Error receiving while generating database

#132 jayramr opened 1 year ago
0
Update data.py

#131 abhijeetsingh1704 opened 2 years ago
0
Missing KO in my ko_frequency_table.tsv

#130 PSSchacksen opened 3 years ago
0
udpates

#129 geronimp closed 3 years ago
0
Dev/add doco

#128 geronimp closed 3 years ago
0
issues with help page/wiki

#127 JinjinyuCityu opened 3 years ago
0
AttributeError: 'Databases' object has no attribute 'M2DEF'

#126 wdp9966 closed 3 years ago
1
enrichM database

#125 fanlu-f opened 3 years ago
5
minor bugfixes

#124 geronimp closed 3 years ago
0
fuzzywuzzi missing from conda env

#123 wwood opened 3 years ago
1
README.md: Update conda install instructions.

#122 wwood closed 3 years ago
0
enrichm annotate KO frequency table but all zeros

#121 mhyleung opened 3 years ago
3
Index out of range error during enrichm annotate

#120 mhyleung closed 3 years ago
2
enrichm error

#119 jianshu93 opened 3 years ago
0
Dev/0.6.2.at2

#118 geronimp closed 3 years ago
0
download the database separately

#117 liupfskygre closed 3 years ago
2
ERROR while classifying using custom module

#116 ShailNair closed 3 years ago
2
cannot open help pages/wiki

#115 Caelyn-gao opened 3 years ago
1
0.5.1 run error

#114 jianshu93 opened 3 years ago
2
fix #112

#113 SilasK closed 3 years ago
2
There is probably a wrong version of urlib in the conda package.

#112 SilasK closed 3 years ago
0
bioconda package

#111 SilasK closed 3 years ago
0
"xargs: illegal option -- -" leading to "No files found with .faa suffix in input directory"

#110 SvenTobias-Hunefeldt closed 3 years ago
0
Custom Database

#109 Abonacolta opened 4 years ago
0
Error opening file /home/databases/enrichm_database_v10/databases/uniref100.dmnd

#108 zyyalice opened 4 years ago
1
Bug fix and new features

#107 apcamargo closed 3 years ago
2
Scripts to update the database

#106 apcamargo closed 4 years ago
7
write splits characters in module path header

#105 minillinim closed 3 years ago
1
enrichm classify fails on blank lines in input file

#104 minillinim closed 3 years ago
0
Database downloader is not working

#103 apcamargo closed 3 years ago
3
Pathway-cytoscape

#102 Taojianchang opened 4 years ago
0
AttributeError: 'Databases' object has no attribute 'REF_DIR'

#101 Thexiyang opened 4 years ago
8
enrichm enrichment error

#100 Taojianchang opened 4 years ago
4
Issues installing/referencing the database

#99 waoverholt opened 4 years ago
3
Enrichment - PCA plots and KO breakdown plots not generated

#98 ashley-isaac opened 4 years ago
3
Update databases

#97 wwood closed 4 years ago
0
Nucleotide sequences of genes in 'genome_genes' directory all have identical sequences

#96 rhysnewell opened 4 years ago
3
What does --depth in enricm explore mean?

#95 TYMichaelsen opened 4 years ago
2
Error: ln: missing file operand when running 'enrichm annotate'

#94 signalbash closed 4 years ago
3
Using custom databases for annotation

#93 adityabandla opened 4 years ago
4
Error when using protein sequences

#92 ashley-isaac opened 4 years ago
2
gene naming issue

#91 wwood opened 4 years ago
1
toolbox: Use subprocess.check_call not call

#90 wwood closed 4 years ago
0
Incorrect database file name

#89 liangjinsong opened 4 years ago
6
Error when downloading database

#88 liangjinsong closed 4 years ago
1