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**Looking for a function that generates a dataframe consisting of nodeId and nodeLabel**
When the graph does not have any node attributes (just `nodeId` and `nodeLabels` are present), I cannot find a…
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Hello,
I would like to know if this code keeps structures between iterations to build a dendrogram after executing Leiden or Louvain.
If so, can you pinpoint it? I would be more than happy to ad…
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Hi,
I have learned about this nice method recently, and have been exploring it since then. I have a question about some weird results I am getting with some high dimensional gene expression dataset…
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when I select a subset of cells using `ad_sub=ad[ad.obs['louvain']=='subcluster_of_interest',:]`, and then re-apply preprocessing routines, this will use only the genes of `ad.X` (variable over the en…
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I think we should introduce a standardized “mask” argument to scanpy functions. This would be a boolean array (or reference to a boolean array in `obs`/ `var`) which masks out certain data entries.
…
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我真的不会map/reduce,哎,所以大哥做了并行化的Louvain嘛,我这边大概上百万个节点,小机器跑不出来呀
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I tried to replicate the .. notebook using scanpy but I got some different results (see notebook [here](https://github.com/fidelram/scanpy_usage/blob/master/170505_seurat/seurat.ipynb)):
1. The ts…
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see https://github.com/theislab/scanpy/issues/1283#issuecomment-645269898
@LuckyMD we should change the tutorials instead of going back, because [louvain is deprecated](https://github.com/vtraag/lo…
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ldd shows:
```
python/lib/python3.8/site-packages/ucp/_libs/ucx_api.cpython-38-x86_64-linux-gnu.so:
libnuma.so.1 => not found
```
for the
```
https://conda.anaconda.org/rapidsai/li…
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This may be a stupid question. But in the README.md, it says that the Louvain method and https://arxiv.org/abs/0812.1770 were used for performing the clustering analysis. Where is the code that invoke…