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Thank you for open-sourcing the code of the paper.
I want to make a model using TCGA. However, When i make patch, block box is made. So a lot of image patches is disappeared.
![image](https:/…
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Hi,
I am trying to use your framework on a dataset that I am trying to work on in my research work. The Whole Slide Images are generated in .mrxs format (unfortunately it's a costraint that I can't c…
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Dear Prof. Mahmood,
I would like to use your CLAM software for tumor tissue prediction of primary breast cancer. I have a few questions, some related to the documentation on how to run the tool.
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Hi! I think we need to catch an exception with something like "if writer is not None:" here:
https://github.com/mahmoodlab/CLAM/blob/e37eb3bac3c72e0f6e3127a01dee8cf4300d7eec/utils/core_utils.py#L22…
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For some reason my heat maps come out looking like this (with black and grey areas). …
dkoen updated
3 years ago
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I could not find the part in the code where a cell graph is constructed from the histology image (segmented using cGAN). I have two questions in this regard:
1. Could you point me to the code (maybe …
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Sorry to bother, I found that there are some "flaw" in the result stiches when runing `create_patches_fp.py` on TCGA dataset.
The example is as:
![TCGA-O2-A52N-01Z-00-DX1 FF1DD149-4DBE-44C7-872D-FA…
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Hello,
Thank you for providing the script for the visualization of the heatmap of a WSI.
Following this, [https://github.com/mahmoodlab/CLAM#Heatmap-Visualization], I got the error as mentioned …
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Hello and thank you for making this extremely helpful method.
I am trying to use your code to generate attention heatmaps. I have noticed that the generated images have a rectangular part of the im…
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Hello, Thank you for making this amazing project a public repo!
I used TCGA-BRCA WSI slides for experimenting with CLAM. When using the default segmentation parameters from the given tcga.csv file …