mahmoodlab CLAM issues - Githubissues

mahmoodlab / CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

http://clam.mahmoodlab.org

GNU General Public License v3.0

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issues

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Attention maps for multiple predictions

#256 otto863 opened 10 hours ago
0
Extracting Raw Patches (.jpg / ./png)

#255 bryanwong17 opened 10 hours ago
0
Heatmaps are patchy and not smooth

#254 rohith2011 opened 2 weeks ago
0
Poor removal of small holes in pathological tissue, how should the parameters be adjusted

#253 hljWmh opened 3 weeks ago
0
heatmap

#252 suminwei opened 1 month ago
1
Color Issue in Heatmap File C3L-01663-21_0.75_roi_0_blur_0_rs_1_bc_0_a_0.4_l_1_bi_0_0.2.jpg in heatmap_production_results\HEATMAP_OUTPUT\LSCC Folder

#251 apple5413 opened 1 month ago
0
vsi format

#250 homadnmr opened 1 month ago
0
expand sdpc format

#249 lingxitong opened 1 month ago
3
Problem running split in CONCH/CLAM environment

#248 suminwei opened 2 months ago
0
Adapting data loader to multi class & multi label

#247 Fel1xJulian opened 2 months ago
0
KeyError: "Unable to synchronously open attribute (can't locate attribute: 'patch_level')"

#246 MarioPaps opened 2 months ago
1
Datasets in configuration file and GPU Training Step

#245 rohith2011 opened 2 months ago
0
added missing args & correct import of eval_transforms

#244 shubhaminnani closed 2 months ago
1
Questions about threshold parameters

#243 huha149 opened 2 months ago
0
Segmentation parameters for WSI with partially black background

#242 Fel1xJulian closed 1 month ago
0
Image likely too large for successful segmentation, aborting - implemented fix available?

#241 Fel1xJulian closed 2 months ago
4
REQUEST FOR ACCESS OF PRESET FILE FOR CAMELYON 16 DATASET?

#240 routsourav1729 closed 2 months ago
0
Does the heatmap visualization code always visualize the heatmap of the first class?

#239 minhmanho closed 2 months ago
2
New code breaks CLAM_MB model

#238 zhanghaoyue closed 2 months ago
1
GPU usage with the new version

#237 gusSCIMOV opened 2 months ago
2
Unable to import 'datasets.dataset_generic'

#236 gusSCIMOV closed 2 months ago
2
add support for UNI/CONCH

#235 fedshyvana closed 3 months ago
0
Error during segmentation

#234 suminwei closed 2 months ago
0
Running CLAM model on independent test data

#233 suminwei closed 2 months ago
0
The code really needs fixing

#232 onbigion13 closed 4 months ago
2
About parameters in process_list.autogen.csv

#231 syy-create closed 3 months ago
1
For binary sub-disease classification

#230 pxliang closed 3 months ago
1
Problems encountered during feature extraction

#229 DuWei0126 closed 2 months ago
1
Fix: Slide ids turned into floats in split csv when names consist of only number

#228 ff98li opened 4 months ago
0
Extracting features problem with h5 files

#227 BioCoderR closed 5 months ago
1
When running create_heatmaps it appears to take up a lot of existing memory! Is this normal?

#226 hemo0826 closed 4 months ago
1
Many Nan values in the extracted feature

#225 folkaholic closed 2 months ago
7
Only one GPU during training

#224 YinZhe0412 closed 3 months ago
4
Some artifacts are identified as tissue regions

#223 huha149 closed 3 months ago
2
What data types can be processed

#222 syy-create closed 3 months ago
4
fixing typos in Readme

#221 Borda opened 6 months ago
1
Seeking Advice: Low Accuracy in CLAM Training on CAMELYON16 Dataset

#220 ACNicotine closed 3 months ago
1
`custom_downsample` specification flipped for heatmaps?

#219 vipulnj closed 3 months ago
3
Threshold adjustment in preprocessing stage

#218 ACNicotine closed 6 months ago
1
Running eval.py

#217 suminwei closed 2 months ago
4
Failed to install using clam.yaml due to conflicts

#216 l-cli closed 3 months ago
2
Issue running create_heatmaps.py

#215 suminwei closed 3 months ago
2
Some WSI cannot be segmented

#214 Ysc-shark closed 3 months ago
1
Run your own dataset

#213 Tanhongyun opened 7 months ago
2
Issue running main.py

#212 suminwei closed 3 months ago
2
The problem of uniform magnification

#211 LiuJin629 closed 3 months ago
2
".ndpi" type WSI

#210 LiuJin629 closed 3 months ago
7
Poor performance

#209 AnitaGoro closed 3 months ago
1
How to set the parameters when converting from 40X WSI to 20X WSI

#208 YinZhe0412 closed 3 months ago
2
difference among seg_level, patch_level and custom_downsample about TCGA-BRCA

#207 ljhOfGithub closed 9 months ago
7