mahmoodlab CLAM issues - Githubissues

mahmoodlab / CLAM

Open source tools for computational pathology - Nature BME

http://clam.mahmoodlab.org

GNU General Public License v3.0

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issues

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Add setting the objective magnification when patching

#287 yang-ze-kang opened 1 day ago
0
evaluation script vs evaluation during training

#286 mhoibo opened 5 days ago
0
Request for Code to Generate Fine-Grained Heatmaps in CLAM Project

#285 rongguangda opened 5 days ago
0
WSI too big

#284 Nail-it-Jason opened 1 week ago
0
Using eval.py

#283 suminwei opened 1 week ago
0
shape incompatibility in score2percentile function in create_heatmaps

#282 cagankpln opened 1 week ago
1
Specify masks?

#281 mguzm4n opened 2 weeks ago
0
Error occurred when patching

#280 lsk-china opened 3 weeks ago
1
Add version information for dependencies?

#279 dodoflyy opened 3 weeks ago
2
Patch levels

#278 suminwei opened 3 weeks ago
2
Is the code for the demo for http://clam.mahmoodlab.org/ available

#277 his0car closed 1 month ago
0
visualization

#276 studymanhujinbo opened 1 month ago
3
Maren dev

#275 mhoibo closed 1 month ago
0
Eval script usage

#274 rohith2011 opened 1 month ago
0
Earlyfusion

#273 rzuberi closed 1 month ago
0
Can't install CLAM through env.yml file

#272 mguzm4n closed 2 months ago
1
ViT？

#271 sjjadsa opened 2 months ago
0
some questions about parameter setting of clustering in main.py

#270 GeneGee closed 1 month ago
0
The split created using Create Split Seq may confuse the Training, Validation, and Test sets, leading to data leakage.

#269 eternalld closed 2 months ago
0
Error while executing main.py

#268 JTatsuya closed 2 months ago
2
Update eval.py

#267 lucyOCg opened 3 months ago
0
The time that CONCH takes

#266 TXPsim closed 2 months ago
2
Heatmaps visualization

#265 BioCoderR closed 2 months ago
1
Identify tumor regions

#264 wangzhengxiao closed 2 months ago
1
model types 'clam_sb', 'clam_mb', 'mil'

#263 mhoibo closed 2 months ago
1
Allow patching using magnification

#262 haydenych closed 3 months ago
0
1 to 1 correspondence between slide (*.svs) and patches/stitches???

#261 qserenali closed 2 months ago
1
openslide.lowlevel.OpenSlideUnsupportedFormatError: Unsupported or missing image file

#260 MUYI-XIAN closed 4 months ago
0
About the custom_downsample parameter in extract_feature_fp.py

#259 H-Q-N closed 2 months ago
1
Atypia

#258 wtprew closed 4 months ago
0
The first step to get the segment ， the margin is too large

#257 simzhangbest closed 2 months ago
1
Attention maps for multiple predictions

#256 otto863 closed 2 months ago
1
Extracting Raw Patches (.jpg / ./png)

#255 bryanwong17 closed 4 months ago
0
Heatmaps are patchy and not smooth

#254 rohith2011 closed 2 months ago
1
Poor removal of small holes in pathological tissue, how should the parameters be adjusted

#253 hljWmh closed 2 months ago
1
heatmap

#252 suminwei closed 2 months ago
1
Color Issue in Heatmap File C3L-01663-21_0.75_roi_0_blur_0_rs_1_bc_0_a_0.4_l_1_bi_0_0.2.jpg in heatmap_production_results\HEATMAP_OUTPUT\LSCC Folder

#251 apple5413 closed 2 months ago
1
vsi format

#250 homadnmr closed 2 months ago
1
expand sdpc format

#249 lingxitong closed 2 months ago
4
Problem running split in CONCH/CLAM environment

#248 suminwei closed 2 months ago
2
Adapting data loader to multi class & multi label

#247 Fel1xJulian closed 2 months ago
1
KeyError: "Unable to synchronously open attribute (can't locate attribute: 'patch_level')"

#246 MarioPaps closed 2 months ago
1
Datasets in configuration file and GPU Training Step

#245 rohith2011 closed 2 months ago
1
added missing args & correct import of eval_transforms

#244 shubhaminnani closed 7 months ago
1
Questions about threshold parameters

#243 huha149 closed 2 months ago
1
Segmentation parameters for WSI with partially black background

#242 Fel1xJulian closed 6 months ago
1
Image likely too large for successful segmentation, aborting - implemented fix available?

#241 Fel1xJulian closed 7 months ago
4
REQUEST FOR ACCESS OF PRESET FILE FOR CAMELYON 16 DATASET?

#240 routsourav1729 closed 7 months ago
0
Does the heatmap visualization code always visualize the heatmap of the first class?

#239 minhmanho closed 7 months ago
4
New code breaks CLAM_MB model

#238 zhanghaoyue closed 7 months ago
1