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mahmoodlab
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CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
http://clam.mahmoodlab.org
GNU General Public License v3.0
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difference among seg_level, patch_level and custom_downsample about TCGA-BRCA
#207
ljhOfGithub
closed
9 months ago
7
minor fix for create_patches_fp.py saving .h5 files to image source directory
#206
VictorLee94
closed
9 months ago
2
positional information restore
#205
ljhOfGithub
closed
9 months ago
0
Running CLAM without Feature Extraction
#204
VictorLee94
closed
9 months ago
0
I want to use your tumor segmentation pretrained model
#203
AnitaGoro
closed
9 months ago
1
CLAM main.py failes
#202
eladzis
closed
3 months ago
4
How to set the "step_size" Parameter in create_patches.py or create_patches_fp.py?
#201
ShiCrazy
closed
3 months ago
1
HeatMap
#200
wxyz-wjx
closed
9 months ago
1
Update WholeSlideImage.py
#199
scjjb
closed
9 months ago
0
about TCGA-A7-A0CD-01Z-00-DX2.609CED8D-5947-4753-A75B-73A8343B47EC.svs
#198
ljhOfGithub
closed
9 months ago
1
problem about N fold cross validation using create_split_seq.py
#197
ljhOfGithub
closed
9 months ago
1
I am experiencing 0% GPU utilization when using the NVIDIA RTX 3090 GPU for feature extraction.
#196
Liuyifan1016
closed
4 months ago
2
label of instances
#195
ravigupta131
closed
4 months ago
1
fix:score2percentile()
#194
ljhOfGithub
opened
1 year ago
1
Refactor: Move clam project to subdirectory
#193
dagoPA
closed
1 year ago
2
Error in plotting heatmap
#192
dawalisi
closed
4 months ago
4
Different slide numbers for TCGA-KICH/KIRC/KIRP in TCGA website and TCGA-RCC you mentioned in the paper
#191
Shentl
closed
1 year ago
2
Conda installation error with PyTorch
#190
jonasmrr
closed
4 months ago
7
Validation loss does not decrease
#189
scogna02
closed
1 year ago
2
Function name overwrites built-in function
#188
research-police
closed
1 year ago
1
Please do not use star imports
#187
research-police
closed
1 year ago
1
[F601] dictionary key 'num_workers' repeated with different values
#186
research-police
closed
1 year ago
1
Image Augmentation
#185
nabilapuspit
closed
1 year ago
4
Loss is oscillating and not minimizing
#184
nam1410
closed
1 year ago
8
Problem with process_contour function when contour is None
#183
loic-lb
closed
4 months ago
0
Problems about extracting freatures
#182
Uninhibit
closed
1 year ago
0
Question about extracting features on Camelyon16
#181
Raymvp
closed
1 year ago
1
A little question in /models/model_clam.py
#180
ShiCrazy
closed
11 months ago
0
Use feature extraction files to train a ML model
#179
Tato14
closed
4 months ago
2
I wrote about the masking part before, but it's not solved.
#178
JaeHyeok-2
closed
1 year ago
2
Problems segmentiong Ventana bif WSI
#177
Tato14
closed
1 year ago
2
How do I get rid of the black part as a result of svs file Mask with image size (125074, 88592)?
#176
JaeHyeok-2
closed
1 year ago
3
something unclear in stitches after using create_patches_fp.py
#175
qidog
closed
1 year ago
1
An error in eval.py
#174
YinZhe0412
closed
1 year ago
1
Heatmaps reversed
#173
nam1410
closed
1 year ago
2
Coordinates mismatch
#172
nam1410
closed
1 year ago
2
error reading DIR_TO_COORDS h5 files
#171
archanabhardwaj
closed
1 year ago
1
adding __init__.py file in datasets dir to make it a module
#170
AmitSharma1127
opened
1 year ago
0
tiffslide with CLAM
#169
mpapadomanolaki
closed
1 year ago
1
ZeroDivisionError: float division by zero
#168
qshwan
closed
1 year ago
1
Unable to install on my windows using anaconda 3
#167
Arita16
closed
1 year ago
1
How to use independent test sets
#166
YinZhe0412
closed
1 year ago
1
Patch magnification
#165
bryanwong17
closed
1 year ago
2
patches are different color from slide
#164
fnurkinali
closed
1 year ago
1
How to downsample from 40x to 20x using create_patches_fp when level 1 is 4
#163
maduc7
closed
1 year ago
6
Custom Downsample in create_patches_fp
#162
shubhaminnani
closed
1 year ago
2
Patches considered in Background while patching
#161
shubhaminnani
closed
1 year ago
2
Accidentally dropping coordinates?
#160
clemsgrs
closed
1 year ago
1
How to maintain reference patch size of 256x256
#159
Tejussurendran
closed
4 months ago
2
Typo fix in parser help
#158
scjjb
closed
1 year ago
0
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