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mahmoodlab
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CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
http://clam.mahmoodlab.org
GNU General Public License v3.0
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Error while executing main.py
#268
JTatsuya
opened
2 days ago
0
Update eval.py
#267
lucyOCg
opened
2 weeks ago
0
The time that CONCH takes
#266
TXPsim
opened
2 weeks ago
2
Heatmaps visualization
#265
BioCoderR
opened
3 weeks ago
0
Identify tumor regions
#264
wangzhengxiao
opened
4 weeks ago
0
model types 'clam_sb', 'clam_mb', 'mil'
#263
mhoibo
opened
1 month ago
0
Allow patching using magnification
#262
haydenych
closed
1 month ago
0
1 to 1 correspondence between slide (*.svs) and patches/stitches???
#261
qserenali
opened
1 month ago
1
openslide.lowlevel.OpenSlideUnsupportedFormatError: Unsupported or missing image file
#260
MUYI-XIAN
closed
1 month ago
0
About the custom_downsample parameter in extract_feature_fp.py
#259
H-Q-N
opened
1 month ago
0
Atypia
#258
wtprew
closed
1 month ago
0
The first step to get the segment , the margin is too large
#257
simzhangbest
opened
1 month ago
0
Attention maps for multiple predictions
#256
otto863
opened
1 month ago
0
Extracting Raw Patches (.jpg / ./png)
#255
bryanwong17
closed
1 month ago
0
Heatmaps are patchy and not smooth
#254
rohith2011
opened
2 months ago
1
Poor removal of small holes in pathological tissue, how should the parameters be adjusted
#253
hljWmh
opened
2 months ago
0
heatmap
#252
suminwei
opened
3 months ago
1
Color Issue in Heatmap File C3L-01663-21_0.75_roi_0_blur_0_rs_1_bc_0_a_0.4_l_1_bi_0_0.2.jpg in heatmap_production_results\HEATMAP_OUTPUT\LSCC Folder
#251
apple5413
opened
3 months ago
0
vsi format
#250
homadnmr
opened
3 months ago
0
expand sdpc format
#249
lingxitong
opened
3 months ago
3
Problem running split in CONCH/CLAM environment
#248
suminwei
opened
3 months ago
0
Adapting data loader to multi class & multi label
#247
Fel1xJulian
opened
4 months ago
0
KeyError: "Unable to synchronously open attribute (can't locate attribute: 'patch_level')"
#246
MarioPaps
opened
4 months ago
1
Datasets in configuration file and GPU Training Step
#245
rohith2011
opened
4 months ago
0
added missing args & correct import of eval_transforms
#244
shubhaminnani
closed
4 months ago
1
Questions about threshold parameters
#243
huha149
opened
4 months ago
0
Segmentation parameters for WSI with partially black background
#242
Fel1xJulian
closed
3 months ago
1
Image likely too large for successful segmentation, aborting - implemented fix available?
#241
Fel1xJulian
closed
4 months ago
4
REQUEST FOR ACCESS OF PRESET FILE FOR CAMELYON 16 DATASET?
#240
routsourav1729
closed
4 months ago
0
Does the heatmap visualization code always visualize the heatmap of the first class?
#239
minhmanho
closed
4 months ago
4
New code breaks CLAM_MB model
#238
zhanghaoyue
closed
4 months ago
1
GPU usage with the new version
#237
gusSCIMOV
opened
4 months ago
2
Unable to import 'datasets.dataset_generic'
#236
gusSCIMOV
closed
4 months ago
2
add support for UNI/CONCH
#235
fedshyvana
closed
5 months ago
0
Error during segmentation
#234
suminwei
closed
4 months ago
0
Running CLAM model on independent test data
#233
suminwei
closed
4 months ago
0
The code really needs fixing
#232
onbigion13
closed
5 months ago
2
About parameters in process_list.autogen.csv
#231
syy-create
closed
5 months ago
1
For binary sub-disease classification
#230
pxliang
closed
5 months ago
1
Problems encountered during feature extraction
#229
DuWei0126
closed
4 months ago
1
Fix: Slide ids turned into floats in split csv when names consist of only number
#228
ff98li
opened
6 months ago
0
Extracting features problem with h5 files
#227
BioCoderR
closed
6 months ago
1
When running create_heatmaps it appears to take up a lot of existing memory! Is this normal?
#226
hemo0826
closed
5 months ago
1
Many Nan values in the extracted feature
#225
folkaholic
closed
4 months ago
7
Only one GPU during training
#224
YinZhe0412
closed
5 months ago
4
Some artifacts are identified as tissue regions
#223
huha149
closed
5 months ago
2
What data types can be processed
#222
syy-create
closed
5 months ago
4
fixing typos in Readme
#221
Borda
opened
8 months ago
2
Seeking Advice: Low Accuracy in CLAM Training on CAMELYON16 Dataset
#220
ACNicotine
closed
5 months ago
1
`custom_downsample` specification flipped for heatmaps?
#219
vipulnj
closed
5 months ago
3
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