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Hi:
For the input spreadsheet to PINT, how do we suppose to find the vertex id corresponding to the given MNI coordinates?
Best,
Renxi
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Documents describe below:
"Steps:
1.Spatially normalize FDG-PET to MNI using SPM12 Normalize.
There is a group template option for PET: first a group template is created, then all subjects are norm…
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So this might just be something unique to my machine... but since I have Freesurfer installed every time I start terminal and my .cshrc is sourced the freesurfer info is output.
For whatever reason…
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### What happened?
Running fMRIprep with pre-computed freesurfer output using -hires and -expert options flag in recon-all makes fMRIprep crash at autorecon1 stage
### What command did you use?
```…
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Let's consider this.
Also add in Matlab code, brain plotting, and MNI data files. Jupyter notebooks?
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Hey,
Is there a document about where each of the parcellations was originally downloaded from? Some of the parcellations (Glasser, Schaefer etc.) were originally created on the cortical surface. H…
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Triggered by upstream libminc issue https://github.com/BIC-MNI/libminc/issues/108
Work around is to use `miget_real_value_hyperslab` with a 1 voxel hyperslab instead of `miget_real_value` .
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libminc has NIFTI support, so it (could be) fairly easy to add NIFTI to RMINC:
Particularly, volume_io:
https://github.com/BIC-MNI/libminc/blob/e75a936c12a305b596d743c26a5437196ebce2a4/volume_io/Vol…
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Once the papers have been filtered (#11) - key part of the preprocessing will be
- [x] determining the neural space used (MNI coordinates? atlas? which one?)
Whatever the paper is using,
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Hi，
I used on macOS (10.12) with Jupiter notebook (python ver 3.8.5). The pysurfer version is 0.11.0. I tried to project the MNI volume result into the surface. But the surface plots for the left …