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Since I am using a reference genome of a non-model organism, I did not use the AddMotifs function because it throws an error due to unmatched features: "No features in common between the ChromatinAssa…
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Hi,
since I used Xmonad before, I see a real benefit from undecorating windows when in a tiling mode. Even more in shell-themes with big Window controls (e.g. for TabletPCs) they take up a lot of spa…
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I am working on ATAC-seq mice data and have developed a function to run bias model training across all folds and comparison groups. While testing the function with fold 1 and the group fed_vs_fasted_0…
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Hello and thanks for **turboGliph**! Here are a couple of issues that I have noted and am trying to understand. I use the included package dataset for reproducibility.
```
library(turboGliph)
uti…
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Following discussion already have in post #2, I did some tests on two of our samples. However, I observe different results among them. Note that for the simplicity,
- the base calling is done wit…
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Observed the following error when using `plotRegion()` on a grouped counts object (9 groups). Also observed in other datasets when plotting larger numbers of groups (MP).
Call:
`options(repr…
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sessionInfo()
R version 4.3.0 (2023-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblas-…
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Hello:
When run `CreateMotifMatrix`:
```{r}
library(chromVAR)
library(JASPAR2020)
library(TFBSTools)
library(motifmatchr)
library(BSgenome.Mmusculus.UCSC.mm10)
DefaultAssay(pbmc)
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| Name | Department/Program | Experties/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Annie Cavalla | Bioinformatics | Cancer genomics, single cell tra…
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https://mp.weixin.qq.com/s/YgWr5yxxcJurmcZ0gkgSBA
ixxmu updated
2 months ago