issues
search
aifimmunology
/
MOCHA
R package for single-cell Open Chromatin Identification & Downstream Analysis
https://aifimmunology.github.io/MOCHA/
GNU General Public License v3.0
2
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Function for subsetting motifs.
#155
markphillippebworth
closed
3 months ago
0
Unhashed
#154
markphillippebworth
closed
3 months ago
0
Patch diff
#153
markphillippebworth
closed
3 months ago
0
Error running runZIGLMM() when glmmTMB not installed
#152
lokada-aifi
closed
3 months ago
3
Option to return GRangesList or list of GRanges for getPopFrags()
#151
lokada-aifi
closed
3 months ago
0
GetPopFrags bug converting large datasets to GRangesList
#150
lokada-aifi
closed
3 months ago
2
Metadata error
#149
markphillippebworth
closed
8 months ago
0
Add links to DESCRIPTION
#148
olivroy
closed
8 months ago
0
Plot fix implementation
#147
markphillippebworth
closed
9 months ago
0
Clarify language in error in getPopFrags
#146
imran-aifi
closed
2 months ago
1
exportCoverage output bigwig naming error when specifying cell populations
#145
imran-aifi
opened
9 months ago
0
annotateTiles incorrectly errors error when we provide TxDb and Org with a RangedSummarizedExperiment
#144
imran-aifi
closed
1 week ago
1
plotRegion Fix
#143
imran-aifi
closed
9 months ago
0
Development
#142
imran-aifi
closed
5 months ago
0
GeneralizeStudySignal
#141
imran-aifi
closed
10 months ago
0
Misc improvements
#140
markphillippebworth
closed
8 months ago
0
Bioconductor hotfix - test changes only
#139
imran-aifi
closed
9 months ago
0
Plotregion function genome location doesn't match with the location in genome browser
#138
ziyuanhe
closed
3 months ago
1
Hotfix: validate and enforce row/colnames and order in summarizedData assays
#137
imran-aifi
closed
1 year ago
0
Hotfix: unintended cluster re-creation and NA cell type error when summarizing metadata
#136
imran-aifi
closed
1 year ago
0
Accidentally merged Chai in. Trying to undo that.
#135
markphillippebworth
closed
1 year ago
0
Why do we check for outDir here?
#134
imran-aifi
closed
2 months ago
1
Development
#133
markphillippebworth
closed
1 year ago
0
Share mocha
#132
markphillippebworth
closed
1 year ago
0
CRAN Release 1.0.0
#131
imran-aifi
closed
1 year ago
0
CellCounts and FragCounts metadata revision
#130
imran-aifi
closed
1 year ago
0
ENH: Enabling across celltypes
#129
markphillippebworth
closed
1 year ago
0
Importing latest MOCHA updates to development branch (IntegrationWork)
#128
markphillippebworth
closed
1 year ago
0
removing extra combineSampleTileMatrix
#127
imran-aifi
closed
1 year ago
0
Add MSEA
#126
imran-aifi
closed
1 year ago
0
Differentials reproducibility patch
#125
imran-aifi
closed
1 year ago
0
Insertion Visualizations and Plotting
#124
imran-aifi
closed
5 months ago
0
subsetting additional metadata for subsetMOCHAObject
#123
markphillippebworth
closed
1 year ago
0
Variable assignment changes in parallelization helper functions
#122
imran-aifi
closed
3 months ago
0
WIP: New Parallelization for DATs
#121
imran-aifi
closed
3 months ago
1
Need to add updatePath function
#120
markphillippebworth
opened
1 year ago
0
Enhancement: Clean up data input
#119
markphillippebworth
opened
1 year ago
0
Umap edits
#118
markphillippebworth
closed
1 year ago
2
Longitudinal modeling
#117
imran-aifi
closed
1 year ago
0
Dimensionality reduction
#116
imran-aifi
closed
1 year ago
0
MOCHA::callOpenTiles error with getAnnotationDbFromInstalledPkgname function
#115
ziyuanhe
closed
1 year ago
1
Parallelization overhaul
#114
markphillippebworth
closed
1 year ago
0
Parallelization overhaul
#113
imran-aifi
closed
1 year ago
1
Method to share MOCHA Object
#112
markphillippebworth
closed
3 months ago
1
Genome fix
#111
imran-aifi
closed
1 year ago
4
wCorr dependency
#110
imran-aifi
closed
1 year ago
2
MOCHA needs getters and subsetters
#109
imran-aifi
opened
1 year ago
0
Remove coreNum unused parameter
#108
imran-aifi
closed
1 year ago
0
Hard-coded coreNum
#107
hypercompetent
closed
1 year ago
2
ParLapply improvements to callOpenTiles
#106
imran-aifi
closed
1 year ago
0
Next