-
## 🚀 Feature
During a course an attendee suggested to build a graphical user interface inside napari to enable users to choose label colours.
## Motivation
Especially when working on semantic…
-
hello, sorry for that confusing , I had already solve above those problem, but I have question relate my result for the nuclei segmentation , suppose that input image size is 1000,
th…
-
**Describe the bug**
I have a DAPI Image (Channel 3, identifier C3) and a cell Image (Channel 1 or 2, identifier C1 or C2). The sequemtnartion is working well, all 18 cells got identified. But the sp…
-
Hi, I'm using the `StarDist` library for histological image segmentation in WSI format using the pre-trained model `2D_versatile_he.` The model construction and segmentation process are running correc…
-
Hello! I am trying to use your macro and I am running into an issue. I have converted my files to 16bit, 3 channel tif images. I have a nuclei channel (blue) and an aggregate channel (green), and a…
-
Define the formats to be produced by object segmentation and feature extraction.
Boundaries - will need a function to convert a list of 2 x N arrays (x,y) to some format for consumption into Girder.
…
-
I've proposed a solution to this issue in a pull request #40 .
The [NMS implementation](https://github.com/mpicbg-csbd/stardist/blob/f8e63dc3fe1c662b4ee71b2cc54d01728b8bd6a5/stardist/lib/stardist3d…
-
> Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumor-infiltra…
-
I am trying to run model testing from a doi.
In the docs it said I should do `bioimageio test-model -m `
But it said `-m` is not an option:
```
(bioimageio.core) weiouyang@europa:~$ bioimag…
oeway updated
2 years ago
-
There is a surprisingly large community of people using Dask for bio-medical imaging. This includes applications like fMRI brain scans, and very high resolution microscopy (3d movies at micro resoluti…