fish-quant fq-imjoy issues

fish-quant / fq-imjoy

ImJoy plugins to run different smFISH analysis in a user-friendly setting.

https://fq-imjoy.readthedocs.io/en/latest/

MIT License

2 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Plugin installation doc could have additional note for ZSH users

#60 vreuter opened 6 months ago
0
'No images with these specifications found.' in Root Folder

#59 tylerbrent opened 9 months ago
2
Error in reading scripts in Imjoy while launching FISH-QAUNT

#58 anandgravi opened 1 year ago
0
Root folder 'Specified data path does not EXIST. No images found.'

#56 Noa164 opened 1 year ago
7
cell count not working

#55 FQU1 opened 1 year ago
1
Skip filtering?

#54 braulio09 opened 2 years ago
0
ROOT folder and SUB folder forward slash default?

#53 zentco opened 2 years ago
1
Can't properly preprocess the images

#52 HaofeiGe closed 6 months ago
6
File loading issue

#51 ynapetrova opened 2 years ago
6
High intensity background detection discarding

#50 alfonsecard opened 2 years ago
3
Suggestion: cell area report in the output file

#49 alfonsecard opened 2 years ago
2
"Select smaller region for testing" Tool Only Accepts Square and Rectangular Selections

#48 austinlandgraf closed 2 years ago
8
Correct bug in rna-to-cell assignment

#47 muellerflorian closed 2 years ago
0
Program Freezes at "Assign RNAs to cells/nuclei" Step

#46 austinlandgraf closed 2 years ago
7
Collection of smaller fixes

#45 muellerflorian closed 2 years ago
0
Upgrade to new big-fish version & improvement of documentation

#44 muellerflorian closed 2 years ago
1
Upgrade to version big-fish 0.6

#43 muellerflorian closed 2 years ago
0
Improve documentation

#42 muellerflorian closed 2 years ago
0
Provide docker image for plugin engine

#41 muellerflorian opened 2 years ago
0
Assigning RNAs to cells/nuclei not working - only finds 1 cell despite 3 appearing in the mask png file

#40 4symmetry19 closed 2 years ago
8
improvements on the documentation

#39 muellerflorian closed 3 years ago
0
File loading is not working anymore

#38 xcarmengrandix closed 3 years ago
5
Upgrade bigfish v5 & add options to assign RNAs to cells

#37 muellerflorian closed 3 years ago
2
Smaller bug fixes

#36 muellerflorian closed 3 years ago
0
Update imjoy-installation.md

#35 muellerflorian closed 3 years ago
0
SNR plugin: support for 2D images

#34 muellerflorian closed 3 years ago
0
collection of smaller commits

#33 muellerflorian closed 3 years ago
0
Collection of smaller (non-essential) fixes ... can be merged at any time

#32 muellerflorian closed 3 years ago
0
Cannot find images

#31 mssher07 closed 3 years ago
10
Add documentation for RNA cluster analysis

#30 muellerflorian closed 3 years ago
0
Add 3D spot fitting

#29 muellerflorian opened 3 years ago
0
SNR plugin

#28 muellerflorian closed 3 years ago
0
'Analyze current image' not working

#27 jstitlow closed 3 years ago
11
New tab control

#26 muellerflorian closed 3 years ago
0
Develop

#25 muellerflorian closed 3 years ago
0
Downloaded zipped result don't conserve original folder structure

#24 muellerflorian closed 3 years ago
0
Provide example data, and download results

#23 muellerflorian closed 3 years ago
0
Provide example data

#22 muellerflorian closed 3 years ago
1
Create interactive docs

#21 muellerflorian closed 3 years ago
3
Kaibu: update to new api

#20 muellerflorian closed 3 years ago
0
Regular expression not saved correctely

#19 muellerflorian opened 3 years ago
0
Allow processing of 2d images

#18 muellerflorian closed 3 years ago
0
allow processing of 2D images

#17 muellerflorian closed 3 years ago
0
Improved projection of 3D images for display

#16 muellerflorian opened 4 years ago
0
Improvements

#15 muellerflorian closed 4 years ago
0
Change theme of documentation to readthethedocs

#14 muellerflorian closed 4 years ago
0
Images are flipped when shown in Kaibu

#13 muellerflorian closed 4 years ago
2
Add functionality to assign RNA detection results to cell segmentation

#12 muellerflorian closed 3 years ago
0
Improvements

#11 muellerflorian closed 4 years ago
0
Add automated detection threshold with L curve

#10 muellerflorian opened 4 years ago
0