-
Hi, I want to know whether I can customize my color scheme when color AAs or Nucleotides?
-
Hi,
Thanks for the useful tool.
I was wondering if prepare_mapped_reads.py script does a similar thing as tombo resquiggle does.
Is it assigning chunks of signals to nucleotides?
please, How d…
-
This is a marker for the issues we discussed on the AIRR-SW-WG call today.
Some characteristics of real-world data sets:
- Many data sets do not cover the entire V-region. It's quite common today…
-
Hello,
probably is a stupid thing, but I can not visualise a PDB file created from gromacs (it is only a 25 nucleotides system)
How it is possible?
I can visualise it with VMD without problem…
-
**Steps to Reproduce**
1. Open Macromolecules mode - Flex mode
2. Open Console
3. Add schema from file [Schema nucleotide with chem with different connections.ket.zip](https://github.com/user-attac…
-
Hi,
I am trying the two methods: phmm and edlib. I found phmm has a high reproducibility, giving the same result between different runs. While edlib can give very different results. I am wondering …
-
It would be great to incorporate enhanced support for Bokeh, including multiple plots (e.g., features, nucleotides, GC%, ...). Also, multiline support within Bokeh would be nice.
-
Currently all nucleotides are colored black. Coloring A red, C yellowish, G green, U blue would make it easier for users to see sequence conservation or non-conservation.
-
In the output of `dmr multi` there are columns such as `samplea_counts` and `sampleb_counts`. Given that the command is given sample names it would be nice if the file itself contained pairings betwee…
-
Hello,
Is it possible to use gapped sequences as input to kpLogo - i.e. unknown nucleotides or amino acids?
In my case, I would like to analyse k-mers across aligned antibody peptides -- each se…