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epi2me-labs
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pychopper
cDNA read preprocessing
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Clarification on PCS114 vs. PCS111 Primer Configuration in Pychopper
#70
bernardo-heberle
closed
2 weeks ago
2
Dorado trim vs pychopper trimming differences
#69
NikoLichi
opened
3 weeks ago
1
trim dead code
#68
a-detiste
closed
4 days ago
1
Issue with unclassified reads LSK114 kit
#67
NikoLichi
opened
2 months ago
4
`import imp` has been removed from Python 3.12
#66
a-detiste
closed
1 month ago
1
Question about the two detection methods
#65
CHENAO-QIAN
opened
2 months ago
3
Barcode sequence still in reads after trimming
#64
NHoang98
opened
2 months ago
2
pychopper with Native Barcoding Kit (SQK-NBD114)?
#63
jylee43
closed
2 months ago
2
The full-length sequences are shorter than the derRNA sequences.
#62
biochristmas
closed
1 month ago
2
Which -k kit should be chosen for the PCR-cDNA Sequencing Kit (SQK-PCB114.24) and PCR Barcoding Kit (PBC096)?
#61
biochristmas
closed
3 months ago
2
Trim adapter
#60
lalalagartija
closed
3 months ago
2
"no reverse complement" warnings
#59
omarkr8
closed
4 months ago
6
pychopper hanging without error message
#58
dudududu12138
closed
2 months ago
7
Change umi pattern
#57
passelma42
closed
4 months ago
2
Primers/Adapters for kit SQK-LSK112 or SQK-NBD112-96
#56
NikoLichi
closed
4 months ago
2
Pychopper New PCR-cDNA Kit PCB114.24
#55
MustafaElshani
opened
7 months ago
11
Pychopper is not taking the specified parameters and is not finding records in input file
#54
Soreic
closed
4 months ago
4
Large variation in a trimmed output
#53
NikoLichi
closed
7 months ago
1
One question about dorado basecalling trim option
#52
dolittle007
closed
7 months ago
2
remove dependency on six
#51
a-detiste
closed
7 months ago
5
Auto tuning of q parameter not responding to -Y or defaults
#50
lindehell
closed
3 months ago
4
trim out PCS111 UMI
#49
camillaugolini-iit
closed
8 months ago
3
Pychopper parameters and running time
#48
WQQIGDB
closed
8 months ago
6
which kit parameter to choose for LSK109 kit
#47
alexyfyf
closed
8 months ago
2
Pychopper stalling hanging
#46
MustafaElshani
opened
9 months ago
4
Question about LSK114 primer sequences
#45
cjops
closed
4 months ago
4
What does the numeric value of q mean?
#44
mauricebarrett
closed
9 months ago
3
Installation not working properly
#43
rb520826
closed
4 months ago
4
dorado `.bam` files
#42
MustafaElshani
closed
9 months ago
1
issue of alignment scores file
#41
zhangqc723
closed
9 months ago
7
Rescued reads
#40
zhangqc723
closed
9 months ago
3
Orientation issue
#39
VandaLovejoy
closed
2 months ago
3
primer fasta/fastq format issue
#38
mertz1611
closed
1 year ago
4
Difficult to install
#37
physnano
closed
1 year ago
5
Pychopper produces UMIs with nucleotide "N"
#36
AdnanAbouelela
closed
1 year ago
3
How to print Pychopper version?
#35
elhossary
closed
1 year ago
3
Error when assigning kit "LSK114" to -k parameter
#34
elhossary
closed
1 year ago
3
length filtering not working
#33
alexyfyf
closed
1 year ago
3
Mapping of rescued reads
#32
MartinezRuiz-Carlos
closed
1 year ago
2
Installation problems since latest update
#31
bernardo-heberle
closed
1 year ago
1
Dual peaks on %GC plot from fastQC after running pychopper
#30
chad388
closed
1 year ago
3
Processing whole dataset progress bar?
#29
majdabdul
closed
1 year ago
2
Error with 'append' while running pychopper
#28
majdabdul
closed
1 year ago
4
Implications of the change of license on distribution by Debian
#27
pgrt
closed
1 year ago
4
About Using User's Own Primer Sequences
#26
liuyh99
closed
1 year ago
3
How to combine pychopper with other adapters-removing tool?
#25
qiuyixmm
closed
1 year ago
1
Strange primers configuration of hit alignments
#24
NurislamSheih
closed
1 year ago
9
How can I install pychopper with source code?
#23
mianlee
closed
1 year ago
2
FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future.
#22
NanoCoreUSA
closed
1 year ago
1
Fix issue with spaces in the read name
#21
rlowe-altoslabs
closed
1 year ago
1
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