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It seems all test cases with that option fail with the following (first) error:
Error: Type checker found wrong number of fields while tokenizing data line.
Perhaps you have extra TAB at the end of …
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Hi @ebergstr,
Thanks for the amazing tool. I was just thinking is it possible (with current implementation or with some modifications) to annotate each variant in the input files with the context (…
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Hi All,
I am interested to use selene on my own data. I am thinking to try couple of things.
One is to train the selene on TF ChIP-Seq data of my interest and perform ISM. I think this is exact…
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Hi,
Thanks for developing this package. Its very useful for people who wants to get started with machine learning in genomics.
I have a very naive question about Getting Started tutorial. I wou…
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**Describe the bug**
I'm using the newest pipeline version and updated caper within conda to 0.8.2.
My script:
conda activate encode-chip-seq-pipeline
cd $OUTPUT_DIR
sbatch -A aeurban -J chipseq…
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We should have a paragraph on prior applications of tHMMs since there are one or two. I would also mention linkage analysis here, and analysis of incomplete penetrance in family trees.
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Following up on #15536
>The current definition of 'GO:0003712 transcription cofactor activity' states that 'cofactors mediate protein-protein interactions between regulatory transcription factors a…
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Hi,
HMMRATAC identifies a set of training regions throughout the genome to train a 4-states Hidden Markov Model (HMM) with multivariate Gaussian emissions, representing the underlying four chromatin …
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This is an issue which arose through some matrix consistency checks.
https://github.com/geneontology/go-annotation/issues/1490#issuecomment-271813323
I'm assessing intersections of cohesin compl…
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We should start doing this. Via website/Twitter???
Devs discussed how selection could be made by a new function in the Editor which would also work for IntAct DSotM
/cc @sandraorchard @pporraseb…