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SchulzLab
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TEPIC
Annotation of genomic regions using transcription factor binding sites and epigenetic data
MIT License
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TypeError in annotateTSS.py when using GTF
#37
cardonaaaa
opened
1 year ago
9
The motif length files have wrong indices
#36
moritzschaefer
closed
3 years ago
3
TRAP runs forever for merged-human and -vertebrates PSEMs
#35
moritzschaefer
closed
3 years ago
9
Add conda support
#34
moritzschaefer
opened
3 years ago
3
Error not reported with subfolders in --outDir param from INVOKE.R
#33
xpastor
closed
4 years ago
1
Decay scaled affinities for DYNAMITE analysis
#32
juhomon
closed
4 years ago
2
Gene scores from TEPIC differ depending on Python version
#31
JLGentry
closed
4 years ago
2
Question: -b .bed file last column = peak-intensities?
#30
JulianRein
closed
5 years ago
1
Testcases with "-f example_annotation.gtf" fail
#29
JulianRein
closed
4 years ago
6
Update README.md
#28
ndelange
closed
5 years ago
1
Scripts/computeMeanRatioTFAffinities.py
#27
HeyLifeHD
closed
6 years ago
5
Error during gene annotation
#26
HeyLifeHD
closed
6 years ago
11
-r option causing TEPIC.sh to crash
#25
CRoberto1926
closed
6 years ago
2
computeMeanRatioTFAffinities is not Python3.x compliant
#24
ghost
closed
7 years ago
2
TEPIC.sh prefix wrong
#23
ghost
closed
7 years ago
1
runDYNAMITE.sh parallel processes
#22
ghost
closed
7 years ago
3
runDYNAMITE.sh fails on existing folders
#21
ghost
closed
7 years ago
1
integrateData.py failing to match geneIDs
#20
LRizzardi1
closed
7 years ago
3
findBackground Python script
#19
ghost
closed
7 years ago
0
Development
#18
Xethic
closed
4 years ago
2
Implement error-logger throughout the project
#17
Xethic
closed
3 years ago
0
Can't locate elastic net model source code
#16
Prayforhanluo
closed
7 years ago
2
Cleanup incomplete
#15
ghost
closed
7 years ago
1
Different scaleAffinity script
#14
ghost
closed
7 years ago
1
improve usability for TEPIC
#13
SchulzLab
closed
7 years ago
2
Chromosome names
#12
DoaneAS
closed
7 years ago
3
Setup procedure
#11
ghost
closed
7 years ago
0
Include EIGEN Math library
#10
Xethic
closed
8 years ago
1
Create Makefile or CMake files
#9
Xethic
closed
8 years ago
1
Create a wiki covering the basic topics
#8
Xethic
opened
8 years ago
1
Normalization of Hi-C matrices
#7
Xethic
closed
7 years ago
0
Translate the source code from Python into C++
#6
Xethic
opened
8 years ago
4
Test new Module with real HI-C data
#5
Xethic
closed
8 years ago
2
Define separate moduls for Hi-C data and functional epigenetic annotations
#4
Xethic
closed
5 years ago
4
Incorporate peak calling results into kernel density function
#3
Xethic
closed
7 years ago
1
Implement/Include peak calling algorithm
#2
Xethic
closed
7 years ago
2
Implement HI-C matrix parser
#1
Xethic
closed
8 years ago
2