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meyer-lab
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tHMM
A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
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Bump idna from 3.6 to 3.7
#999
dependabot[bot]
opened
4 months ago
0
Bump pillow from 10.2.0 to 10.3.0
#998
dependabot[bot]
opened
4 months ago
0
Bring back numba handling the M step
#997
aarmey
closed
5 months ago
1
Simpler MCF10A handling
#996
aarmey
closed
5 months ago
0
Fix MCF10A import
#995
aarmey
closed
5 months ago
1
Merge some of the gamma distribution fitting
#994
aarmey
closed
5 months ago
1
Move state handling to the lineage
#993
aarmey
closed
5 months ago
1
Faster estimator without numba
#992
aarmey
closed
5 months ago
1
Entzynger tree is working
#991
aarmey
opened
5 months ago
1
Bump pillow from 9.5.0 to 10.2.0
#990
dependabot[bot]
closed
6 months ago
2
Move to Eytzinger layout
#989
aarmey
opened
8 months ago
0
Plot population level from lineage data
#988
Farnazmdi
opened
1 year ago
0
Bump requests from 2.28.2 to 2.31.0
#987
dependabot[bot]
closed
1 year ago
1
Fixes by autopep8 action
#986
github-actions[bot]
closed
9 months ago
0
Fixes by autopep8 action
#985
github-actions[bot]
closed
1 year ago
0
Pre-calculate cell relationships
#984
aarmey
closed
1 year ago
5
Fixes by autopep8 action
#983
github-actions[bot]
closed
1 year ago
0
Clean a bit more
#982
aarmey
closed
1 year ago
1
set up random seed for reproducible results
#981
Farnazmdi
closed
1 year ago
5
Fixes by autopep8 action
#980
github-actions[bot]
closed
1 year ago
0
First changes
#979
aarmey
closed
1 year ago
3
removed pickle files
#978
Farnazmdi
closed
1 year ago
1
Fixes by autopep8 action
#977
github-actions[bot]
closed
1 year ago
0
Cleanup
#976
aarmey
closed
1 year ago
0
Fixes by autopep8 action
#975
github-actions[bot]
closed
1 year ago
0
No numba and various cleanup
#974
aarmey
closed
1 year ago
1
Taxol
#973
Farnazmdi
opened
1 year ago
1
Bump setuptools from 65.5.0 to 65.5.1
#972
dependabot[bot]
closed
1 year ago
0
Bump pillow from 9.2.0 to 9.3.0
#971
dependabot[bot]
closed
1 year ago
0
Bump certifi from 2022.9.24 to 2022.12.7
#970
dependabot[bot]
closed
1 year ago
1
Bump joblib from 1.1.0 to 1.2.0
#969
dependabot[bot]
closed
1 year ago
1
files updated
#968
Farnazmdi
closed
1 year ago
3
Update stateCommon.py
#967
Farnazmdi
closed
1 year ago
1
Fixes by autopep8 action
#966
github-actions[bot]
closed
1 year ago
0
Make fitting reproducible
#965
aarmey
closed
1 year ago
1
Generations and parents by index array
#964
aarmey
closed
1 year ago
3
Simplify import code
#963
aarmey
closed
1 year ago
1
Yet more cleanup
#962
aarmey
closed
2 years ago
1
More adjustments
#961
aarmey
closed
2 years ago
1
Refactor tHMM to enable tHMM typing
#960
aarmey
closed
2 years ago
1
Faster fitting through SLSQP
#959
aarmey
closed
2 years ago
0
Fixes by autopep8 action
#958
github-actions[bot]
closed
2 years ago
0
Cross validation with equal transitions
#957
Farnazmdi
closed
1 year ago
7
changes
#956
Farnazmdi
closed
2 years ago
0
Transform variables to remove linear constraint
#955
aarmey
closed
2 years ago
0
Bump lxml from 4.9.0 to 4.9.1
#954
dependabot[bot]
closed
2 years ago
1
Fixes by autopep8 action
#953
github-actions[bot]
closed
2 years ago
0
all figures updated
#952
Farnazmdi
closed
2 years ago
7
Avoid leaving zombie processes around after a run
#951
aarmey
closed
2 years ago
0
Fixes by autopep8 action
#950
github-actions[bot]
closed
2 years ago
0
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