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meyer-lab
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tHMM
A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
10
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1
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cross validation on experimental data
#949
Farnazmdi
closed
2 years ago
1
Use SLSQP throughout
#948
aarmey
closed
2 years ago
1
Fixes by autopep8 action
#947
github-actions[bot]
closed
2 years ago
0
Improve estimator with analytical gradient
#946
aarmey
closed
2 years ago
1
hide observations in a list of lineages
#945
Farnazmdi
closed
2 years ago
1
leave out part of cross validation
#944
Farnazmdi
closed
2 years ago
1
Fixes by autopep8 action
#943
github-actions[bot]
closed
2 years ago
0
Multi t
#942
Farnazmdi
closed
2 years ago
1
Add pseudocount and improve init
#941
aarmey
closed
2 years ago
1
cross validation additions
#940
Farnazmdi
closed
2 years ago
3
Corr
#939
Farnazmdi
closed
2 years ago
1
Performance adjustments in Gamma estimator
#938
aarmey
closed
2 years ago
1
Fixes by autopep8 action
#937
github-actions[bot]
closed
2 years ago
0
A Numba version of the censored estimator
#936
aarmey
closed
2 years ago
1
Code to save cells observations for correlation calculation
#935
Farnazmdi
closed
2 years ago
1
A fixed censored estimator
#934
aarmey
closed
2 years ago
0
Fix censor
#933
Farnazmdi
closed
2 years ago
0
Fixes by autopep8 action
#932
github-actions[bot]
closed
2 years ago
0
Fix censored estimator
#931
aarmey
closed
2 years ago
6
Some small adjustments during code review
#930
aarmey
closed
2 years ago
3
return parameters to previous
#929
Farnazmdi
closed
2 years ago
0
Remove statsmodels
#928
aarmey
closed
2 years ago
0
Rerun
#927
Farnazmdi
closed
2 years ago
1
remove extra figures from cartoon
#926
Farnazmdi
closed
2 years ago
0
clean-up
#925
Farnazmdi
closed
2 years ago
0
Fixes by autopep8 action
#924
github-actions[bot]
closed
2 years ago
0
F
#923
Farnazmdi
closed
2 years ago
1
Fixes by autopep8 action
#922
github-actions[bot]
closed
2 years ago
0
Update test_BaumWelch.py
#921
Farnazmdi
closed
2 years ago
4
correlation
#920
Farnazmdi
closed
2 years ago
1
mix of figure edits and cv
#919
Farnazmdi
closed
2 years ago
3
Fixes by autopep8 action
#918
github-actions[bot]
closed
2 years ago
0
Update test_BaumWelch.py
#917
Farnazmdi
closed
2 years ago
1
Fixes by autopep8 action
#916
github-actions[bot]
closed
2 years ago
0
figure18 with 5 states from gemcitabine 10nM
#915
Farnazmdi
closed
2 years ago
1
Fixes by autopep8 action
#914
github-actions[bot]
closed
2 years ago
0
simplify
#913
Farnazmdi
closed
2 years ago
1
Optimization fix
#912
aarmey
closed
2 years ago
1
Fixes by autopep8 action
#911
github-actions[bot]
closed
2 years ago
0
transition matrix not shared
#910
Farnazmdi
closed
2 years ago
2
unit tests for E and M step separately
#909
Farnazmdi
closed
2 years ago
1
Fixes by autopep8 action
#908
github-actions[bot]
closed
2 years ago
0
Upg
#907
Farnazmdi
closed
2 years ago
1
reviewer comments
#906
Farnazmdi
closed
2 years ago
2
Comments1
#905
Farnazmdi
closed
2 years ago
0
Upgrade packages.
#904
Farnazmdi
closed
2 years ago
0
Doc
#903
Farnazmdi
closed
2 years ago
1
Fixes by autopep8 action
#902
github-actions[bot]
closed
2 years ago
0
Updated docstrings
#901
jclagarde
closed
2 years ago
1
Document
#900
Farnazmdi
closed
2 years ago
1
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