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KP.3.1.1+C21855T(S:S98F)
GISAID query: C21855T,A13121T,C12616T
No. of seqs: 15(Spain 12 USA 1 Sweden 1 Canada 1 )
First: EPI_ISL_19190390, Spain, 2024-5-26
Latest: EPI_ISL_19274498,Spain, 2024…
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Credit: spotted by @HynnSpylor
LU.2 reached a sky-high prevalence in Ecuador in late June around 25%.
Looking at its tree i noticed a S:F176F branch that got then splitted in two interesting subbr…
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KS.1+C22414T+G22272A(S:R237K)+T19935C,A22995C(S:K478T, rev)
GISAID query: C22414T, G22272A,T19935C
No. of seqs: 17(USA-SD,OH,IA)
First: EPI_ISL_19271540, 2024-6-9
Latest: EPI_ISL_19271575, 202…
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## XBB.1.9* Lineage Tracker
### L455F
- [ ] FL.16 > T22928C(**S:F456L**) > A13913G(ORF1b:N149S), T16029C > G960A(ORF1a:R232H), A2589G(ORF1a:E775G), C2892T(ORF1a:A876V), _rev_T3511C_, T4008A(ORF1…
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From branch 107 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089
BA.2.86 > T10819C,C28720T > Orf1b:Y1344H (T17497C) > C21646T, S:N487D (A23021G) ,A23089G, C28115T > S:A348P (G2…
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KP.2+A2512G,G14773A(Orf1b:D436N)+C23277T(S:T572I)+A25359G(S:K1266R)
This is misplaced by usher in a flip-flop branch @AngieHinrichs
GISAID query: A2512G,G14773A,C23277T,A25359G
No. of seqs: 14(…
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There seems to be another KP.3.1.1-T572I branch.
KP.3.1.1+C9803T+T17982C+G28396A(Orf9b:G38D)+C18486T,C23277T(S:T572I)
GISAID query: G28396A, C23277T, C9803T,G11727A(edited)
No. of seqs: 6(UK)
…
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JN.1+C26753T (Orf10:P10S)
Gisaid query: C10741T, C26753T, C29585T
No. of seqs: 101
First: EPI_ISL_18971329, 2024-1-12
Latest: PQ029952.1, 2024-6-12
[usher](https://nextstrain.org/fetch/genome.ucs…
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**Description**
**Sub-lineage of:** KP.3.3
**Earliest sequence:** 2024-5-13, Luxembourg — EPI_ISL_19229409
**Most recent sequence:** 2024-7-22, Denmark — EPI_ISL_19299736
**Continents circulating:…
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Transferred back to https://github.com/sars-cov-2-variants/lineage-proposals/issues/1671
In the batch uploaded today from Philippines i noticed a weird a double AA mutation in the spike in a row.
…