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Hi Team Zinc,
Here is some feedback on your progress report. Your TA mentor will also provide some feedback, as well as the results of marking.
* The revised division of labour seems imbalanced.…
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All GWAS models in GAPIT appear to be giving very different results from previous analysis of the same files just a few weeks ago. In each case, there are many SNPs, possibly hundreds above the P
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Hola,
Is it possible to use lda {MASS}? Can you please provide an example?
Thanks
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- [x] Remove usage of `autoplot()`, which caused some confusion
- [x] instead explain what the `prcomp` object is and how to extract things from it "manually"
- [ ] use `top_n()` to get top PC loadi…
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Dear Palantir developers, @ManuSetty
Palantir is an excellent tool for trajectory analysis, but I have a problem now.
My input is a published dataset containing Oligodendrocytes lineage cells(Cell …
x1han updated
2 months ago
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Hi,
I have managed to run the CSEA method, but I have several questions. I hope you have time to answer.
1. Can the "latent" data matrix in VISION be Principal Component Analysis (PCA) embedding…
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Hi @evanpeikon
Thank you for sharing this analysis. Interestingly, I get similar numbers of cells and genes, but I don't transpose the AnnData object. I end up with nearly identical numbers of gen…
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### Description
Currently the Eigenvalues of the original correlation matrix are reported, i.e., these are the Eigenvalues associated with principal components and not common factors. Therefore, I su…
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**Describe the bug**
Using cuml.PCA with `set_global_device_type` to 'CPU' and 'GPU' produce different results (with `set_global_device_type('CPU')` matching the output of sklearn's PCA).
**Steps/…
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Hi there,
Thank you very much for programming DeltaTE. It is very helpful for studying translation regulation.
Recently, I ran an analysis and got some buffered genes, but it is confusing why th…