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Hi all,
First of all thanks for all your work in DIA-NN, make our life much easier. I faced a problem with some Fasta files that I want to introduced to generate the libraries. My fasta files are pro…
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MGCCGCGSCGCSGG\***GGGCGGGCGGGCGSCTTCR**CYRVGCCSSCCPCCRGCCGGCCSTPV
MGCCGCGSCGGCGGRCGGGCGGGCSGGCGGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPC
MGCCGCGSCGGCGGGCGGCGGGCGGGCGGGCGSCTTCRCYRVGCCSSCCPCCRGCCGGCC
Comet i…
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Hi! We are using XTandemAdapter in our pipeline and we got an error with the message below. Seems like `PeptideIndexer` failed to match some peptides matched by X!Tandem.
```
Aho-Corasick done:
…
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Dear respected author, hello!
I am currently conducting the database search work of immune peptidomics.
May I ask, apart from simply setting the threshold of peptide false discovery rate (pep FDR),…
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> ACTION: Everyone: Consider the following TripleTOF spectrum and see how to support it
>
> mzspec:PXD013210:TTB20160722_ISBHJOMXX001879_r01:scan:19809:SITS[phospho]PTTLYDR/2
> https://db.systemsb…
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**Describe the bug**
It takes 120 to 150 hours per file to finish the deisotoping step. Is this normal? I will also post this in the gmail group.
Also another post here might be of similar problem? …
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I installed all the tools on a clean galaxy instance based on all the workflows (`workflow-to-tools` + `shed-tools install`) + installed all the workflows itself and went trough all them manually, rev…
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Dear Vadim,
I am struggling a bit with the cleaning of my data.
I do plasma proteomics on a TIMS-TOF and DIA-NN 1.8.1 found many low abundant proteins with an intensity under 1000. I even obtained…
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I tried to format a Prosit library like the TraMl lib. I am getting a similar error to what I did with an MGF massiveKB library—I think its not able to associate peptide to protein ?
I get a “file_…
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I am trying to compare results between library-free search
[report.pg_matrix.tsv.txt](https://github.com/vdemichev/DiaNN/files/11439840/report.pg_matrix.tsv.txt)
```
diann.exe --f "C:\Users\anim…