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Hey!
Can the correlations between the tree and the metadata for factorization accommodate phylogenetic information of the host as metadata? Eg. I want to compare if the microbial 16S tree can be fa…
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Hi Nextclade team,
We are actively using nextclade to monitor the V501.V1/B.1.1.7 development in DK - so your software is being used directly by the government to make policy decisions! Awesome too…
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Hello! We have a number of samples that didn't receive an `ambiguity_score`, and the note says they were `Assigned from designation hash.`
I've dug into the code base, and I see that these assignme…
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Copied over from https://github.com/cov-lineages/pangolin/issues/253
Dear Pangolin team,
When assigning lineages to patient samples with pangolin I stumbled over a cluster that looks like B.1.62…
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I am using pangolin to determine lineages but it shows only delta (B.1.617.2).
I want to know the sublineages whether it is AY.1 or something else.
Please help me with this ASAP.
Thanx in advance…
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## B.1.617.2 sub-lineage with ORF1a: I3731V
Zach Hensel
### Description
**Sub-lineage of**: B.1.617.2
**Earliest sequence**: 23 April, 2021 Illinois, USA (searched for N:G215C, ORF1a:T3646A, ORF…
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by Katherine Laiton-Donato, Carlos Franco-Muñoz, Diego A. Álvarez-Díaz, Héctor Alejandro Ruiz-Moreno, José A. Usme-Ciro, Jhonnatan Reales-González, Diego Andrés Prada, Sheryll Corchuelo, Maria T. Herr…
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**Current Behavior**
https://github.com/cov-lineages/pangolin/issues/143
**Expected behavior**
It's super super helpful to have pangolin incorporated into the ncov run! But, we consistently get v…
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Dear paprica developers,
it is really cool to see that phylogenetic placement is used in many areas of research now, and I am particularly grateful that you haven chosen to use our tools epa-ng and…
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Hey Lucas,
I ran into something that I do not fully understand regarding the prediction of the LCA with gappa edit accumulate.
I have placements on a phylogenetic tree through EPA-ng for the seque…