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**Describe the bug**
When attempting to start an Mk analysis on a morphological dataset, I encounter an out-of-memory error (std:bad_alloc when run locally; on slurm, jobs fail with an oom message).
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Hi Simon
I hope you can please help with the nan values in the disMat calculation.
I ran the following commands with the .geno data that I prepared with parseVCFs.py. By the way, I have a vcf fil…
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I am relatively new to AliView but have found it very useful in my phylogenetics work. I'm now working with making multiple sequence alignments of chloroplast genomes (ca. 150,000 bp long each). Mayb…
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Ross Mounce:
I have discovered that some programs don't like "singleton nodes" p4 may also be having this problem
so trees like this:
```
((X76436:483.0,((X60646:436.0,(ABOZ1185:296.0,(D16268:208.0,(…
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Hi! I've been using AliView for a while now without any issues at all, and I actually really love it because I can move blocks of alignment around easily (great for fixing alignment errors). That and …
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Hi all! For years I've been fetching these URLs every day:
https://cog-uk.s3.climb.ac.uk/phylogenetics/latest/cog_all.fasta.gz
https://cog-uk.s3.climb.ac.uk/phylogenetics/latest/cog_metadata.csv.…
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We should run a Bayes Factor test for strict vs uncorrelated lognormal clocks. I don't think that we have enough data to support a more complex model, but worth checking out.
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### Author(s) of proposal
Ashley Field
### Name of taxon
Bosmania
### Rank of taxon
Genus
### Approximate number of species affected
3
### Description of change
[Testo et al…
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I thought it would be good to collect topic/lesson ideas in one place. Comment here and I'll add stuff to this first comment. If the list gets long enough I'll do some organization. Some ideas off the…
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Hello!
I ran snippy-multi on a dataset of about 20 bacterial isolates (*.fasta assemblies) within the same genus (_Enterobacter_ spp.). The core genome length (from core.aln) was around 273,000 base …