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Would it be possible to include the option to use diamond as an alternative to blast?
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Reactome
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62979
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62987
About 90 annotations for both spanning many processe…
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A next step for Unipept is adding support for a functional analysis next to the existing taxonomic analysis. While the problem sounds similar to the taxonomic one, there are a few problems:
* Avail…
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Dangling edges found for Panther. See https://monarch-initiative.github.io/monarch-qc/ for the report; https://data.monarchinitiative.org/monarch-kg-dev/ for the data.
Find out why and suggest a r…
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As explained in https://github.com/pantherdb/fullgo_paint_update/issues/30#issuecomment-549941317 I'll need to implement a check in the IBA generation script that blocks an IBA annotation to a leaf if…
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There appear to be at least two 'kinase binding' terms in the ontology, which should be a child of a more specific parent than they currently are (screenshot below).
- 'protein kinase A binding' sh…
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For non-coding RNA genes, search against Rfam and display and link matches (analogous to InterProScan for protein-coding genes).
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I generate molecules using the following command:
python -u sample_for_pdb.py --ckpt checkpoints/500.pt --pdb_path test_data/3ug2.pdb --num_atom 50 --num_samples 2 --sampling_type generalized --buil…
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Hi,
I am trying to annotate multiple genomes and I am getting a Gateway Time-out error. Sometimes after several attempts, it gets done, but in many cases, an empty file is created. See error below:
…
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We have one viewer focused on variants, modifications and all sequence features, that ~should~ shows only Pfam domains
then we have the protein domains and families feature table showing all Interp…