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Hi Vadim,
I am currently analyzing SWATH data for a clinical cohort that we processed using DIA-NN. Some important context: For this, we generated a sample-specific library of +/- 100 microbial spe…
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In order to perform unittest on the script `bfabric_read.py`, the module `test_bfabric_read.py` has to:
- call `bfabric_read.main(endpoint, query)` (insted of `res = self.bfapp.read_object(endpoint…
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Harden Bayesian MCA so that all the inputs can be specified up front
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would you please provide the link of Linux version of version 1.8.1 beta 16
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Catherine Kaczorowski is going to be uploading mass spec proteomics:
Level 0 ... Raw data
Level 1 ... Skyline documents
Level 2 ... CSV of raw peptide intensities from Skyline
Le…
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```
Hi,
I am starting to write export functions to mzQuantML for xcms,
and I'd like to use mzq-lib to convert to mzTab.
Apparently mzq-lib chokes if no ProteinData is available.
java -jar mzqlib-0.3…
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## The R for Mass Spectrometry Initiative
Authors/developers: @lgatto @sgibb @jorainer
The objectives of the *R for Mass Spectrometry* initiative (https://www.rformassspectrometry.org/) are…
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Following the normalization procedure described in [Specht et al. 2019](https://www.biorxiv.org/content/10.1101/665307v3) for normalizing single-cell proteomics data, I need to normalize the rows of a…
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Dear Elo Lab,
I am very interested in your RolDE approach and would like to apply it to my project. However, when I tried to work on your sample data, I found out that without setting a seed, the res…
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Dear Vadim,
I am struggling a bit with the cleaning of my data.
I do plasma proteomics on a TIMS-TOF and DIA-NN 1.8.1 found many low abundant proteins with an intensity under 1000. I even obtained…