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rformassspectrometry
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QFeatures
Quantitative features for mass spectrometry data
https://RforMassSpectrometry.github.io/QFeatures/
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Issues when implementing `JoinAssays`
#218
Pedroaragon9
closed
1 month ago
2
get preprocessCore source from bioconductor git
#217
lgatto
opened
1 month ago
0
`runCol` argument in `readQFeatures()`
#216
samgregoire
opened
4 months ago
1
add a function to average columns of a SummarizedExperiment
#215
jorainer
opened
6 months ago
9
QFeatures API
#214
lgatto
opened
6 months ago
2
readQFeatures no longer supports reading from a .txt file
#213
lmsimp
opened
7 months ago
6
Rethinking `colData` management when adding or extracting sets
#212
cvanderaa
opened
7 months ago
2
Streamline assay joining with `joinAssays()`
#211
cvanderaa
opened
7 months ago
0
docs: created readQFeatures vignette (issue#206)
#210
cvanderaa
opened
7 months ago
0
Improve addAssayLink() documentation
#209
cvanderaa
opened
7 months ago
0
Issue with local filtering variables and values
#208
lgatto
closed
7 months ago
1
tests: testing .splitSCE()
#207
cvanderaa
closed
7 months ago
1
Create vignette for `readQFeatures()` and co
#206
cvanderaa
opened
7 months ago
0
docs: improved docs for readQFeatures
#205
cvanderaa
closed
7 months ago
0
.formatMtraqReportData() improvements
#204
lgatto
opened
8 months ago
0
Aggregation by a atomic vector (not a list)
#203
lgatto
closed
8 months ago
0
Issue199
#202
cvanderaa
closed
8 months ago
4
Issue199
#201
cvanderaa
closed
9 months ago
0
Import reading functions from scp - see issue 199 for details.
#200
lgatto
closed
8 months ago
12
Tabular data input
#199
lgatto
closed
7 months ago
10
refactor: import filterFeatures from ProtGenerics
#198
jorainer
closed
10 months ago
2
accessor for "sets/experiments" for easier piping
#197
tavareshugo
opened
11 months ago
7
longFormat for SE with rowvars
#196
lgatto
opened
1 year ago
1
Update QFeatures.Rmd
#195
EnesSefaAyar
closed
1 year ago
0
Rethink assays nomenclature
#194
cvanderaa
closed
9 months ago
5
All QFeatures functions should add assays?
#193
cvanderaa
opened
1 year ago
4
Improve sweep for multiple assays?
#192
cvanderaa
opened
1 year ago
0
Feature: automatic identification/labelling of contaminant peptides
#191
cvanderaa
opened
1 year ago
0
Fix unit test upon recent MAE changes
#190
cvanderaa
closed
1 year ago
0
Consistent use of 'pNA'
#189
Charl-Hutchings
closed
1 year ago
4
Feature request: aggregate by sample (i.e. column)
#188
csdaw
opened
1 year ago
4
test: added tests for dropEmptyAssays()
#187
cvanderaa
closed
1 year ago
0
Refactor: QFeatures subsetting
#186
cvanderaa
opened
1 year ago
1
feat: new dropEmptyAssays()
#185
lgatto
closed
1 year ago
2
feature request: remove empty assays
#184
lgatto
closed
1 year ago
6
"Mutate"/assign/create new assays
#183
steveb-123
closed
1 year ago
4
feature request: conditional filtering of missing values
#182
KristinaGomoryova
opened
1 year ago
8
feat: filterFeatures on selected assays (Issue #179)
#181
cvanderaa
closed
1 year ago
0
Allow the processing of multiple assays (Issue #175)
#180
cvanderaa
closed
1 year ago
1
using filterFeatures on selected assays
#179
lmsimp
closed
1 year ago
1
fix: solved bug in selectRowdata()
#178
cvanderaa
closed
2 years ago
1
Issue176: fix filterFeatures()
#177
cvanderaa
closed
2 years ago
1
filterFeatures error
#176
cvanderaa
closed
2 years ago
0
Improve processing steps: logTransform, scaleTransform, normalize, sweep, impute (and aggregateFeatures?)
#175
cvanderaa
closed
1 year ago
0
Bug in nNA()
#174
cvanderaa
opened
2 years ago
0
feature request: filterNA() by column/sample
#173
cvanderaa
opened
2 years ago
1
Switch back to devel docker
#172
lgatto
closed
2 years ago
1
feat: support an HDF5 backend for on-disk memory
#171
cvanderaa
opened
2 years ago
1
Improve filterFeatures() solve issue #150
#170
cvanderaa
closed
2 years ago
2
Implement a c method - solves Issue#166
#169
cvanderaa
closed
2 years ago
3
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